LOCUS ABX21429.1 428 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-1475 PROTEIN_ID ABX21429.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_01533" /inference="protein motif:HMMPanther:IPR002307" /inference="protein motif:HMMPfam:IPR002305" /inference="protein motif:HMMPfam:IPR002942" /inference="protein motif:HMMSmart:IPR002942" /inference="protein motif:HMMTigr:IPR002307" /inference="protein motif:ScanRegExp:IPR001412" /inference="similar to AA sequence:INSD:AAV77345.1" /note="KEGG: sty:STY1673 1.0e-225 tyrS; tyrosyl-tRNA synthetase K01866; COG: COG0162 Tyrosyl-tRNA synthetase; Psort location: Cytoplasmic, score:9.26" /transl_table=11 /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" BEGIN 1 MEILMASSNL IKQLQERGLV AQVTDEDALA ERLAQGPIAL YCGFDPTADS LHLGHLVPLL 61 CLKRFQQAGH KPVALVGGAT GLIGDPSFKA AERKLNTEET VQEWVAKIRK QVAPFLDFDC 121 GENSAIAANN YDWFGSMNVL TFLRDIGKHF SVNQMINKEA VKQRLNRDDQ GISFTEFSYN 181 LLQGYDFACL NKLHGVALQI GGSDQWGNIT SGIDLTRRLH QNQVFGLTVP LITKADGTKF 241 GKTEGGAVWL DPKKTSPYKF YQFWINTADA DVYRFLKFFT FMDIEEINAL EEEDKNSGKA 301 PRAQYVLAEQ VTRLVHGEEG LIAAKRITES LFNGSLGELS EADFEQLAQD GVPMIELEKG 361 TDLMQALVDA ELQPSRGQAR KTIASNAVTI NGEKQSDPEY IFNDEDRLFG RYTLLRRGKK 421 NYCLICWK //