LOCUS ABX21164.1 644 aa PRT BCT 09-NOV-2020
DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23:
- hypothetical protein protein.
ACCESSION CP000880-1210
PROTEIN_ID ABX21164.1
SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4600800)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar
62:z4,z23:--Most bacteria in the species S. enterica belong to one
of seven subspecies; all but subspecies I normally grow only in
cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally
found in reptiles, but also causes outbreaks of salmonellosis in
turkeys and sheep and can occasionally produce both gastroenteritis
and serious disseminated disease in humans. Many human infections
can be traced to contact with reptiles or ingestion of various
reptile products, particularly from rattlesnakes. Fewer than ten
cases in humans are typically reported in the US each year.
The strain of S. Arizonae (62:z4,z23:-) being sequenced is
CDC346-86; it was named RSK2980 by R.K. Selander and is strain
SARC5 of the Salmonella Reference C set. This serovar is of
interest because of its taxonomic position. It appears to be the
most divergent subspecies among the S. enterica. It can be obtained
from the American Type Culture Collection as ATCC BAA-731, or the
Salmonella Genetic Stock Centre as SGSC4693. The genome was
sequenced to 8X coverage, using plasmid and fosmid libraries and
was finished to an error rate of less than 1 per 10,000 bases.
Automated annotation was performed and manual annotation will
continue in the labs of Michael McClelland and Kenneth Sanderson.
The National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. arizonae serovar
62:z4,z23:-"
/mol_type="genomic DNA"
/strain="RSK2980"
/serovar="62:z4,z23:-"
/sub_species="arizonae"
/culture_collection="ATCC:BAA-731"
/db_xref="taxon:41514"
protein /locus_tag="SARI_01262"
/inference="protein motif:HMMPfam:IPR001900"
/inference="protein motif:HMMPfam:IPR003029"
/inference="protein motif:HMMPfam:IPR013223"
/inference="protein motif:HMMSmart:IPR011129"
/inference="protein motif:HMMTigr:IPR004476"
/inference="protein motif:HMMTigr:IPR011804"
/inference="protein motif:ScanRegExp:IPR001900"
/inference="protein motif:superfamily:IPR008994"
/note="KEGG: stm:STM1702 0. rnb; RNase II, mRNA
degradation K01147; COG: COG4776 Exoribonuclease II; Psort
location: Cytoplasmic, score:8.96"
/transl_table=11
/db_xref="InterPro:IPR001900"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004476"
/db_xref="InterPro:IPR008994"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR011804"
/db_xref="InterPro:IPR013223"
BEGIN
1 MFQDNPLLAQ LKQQLHSQTP RAEGVVKATE KGFGFLEVDA QKSYFIPPPQ MKKVMHGDRI
61 VAVIHTEKER ESAEPEALIE PFLTRFVGKI QGKNDRLTIV PDHPMLKDAI PCRAARGVQH
121 EFKEGDWAVA EMRRHPLKGD RSFYADLTQY ITFADDHFAP WWVTLARHNL EKEAPNGVAT
181 EMLDEGLERQ DLTALNFVTI DSASTEDMDD ALYAEELADG RLQLTVAIAD PTAWIAEGSK
241 LDNAAKIRAF TNYLPGFNIP MLPRELSDDL CSLRANEVRP TLTCRMIIAA DGSIDDDIAF
301 FAATIESKAK LAYDNVSDWL ENSGTWQPDN EGIAQQIRLL HRICLSRGEW RHHHALVFKD
361 RPDYRFVLGE KGEVLDIVAE PRRIANRIVE ESMIAANLCA ARVLRDKLGF GIYNVHTGFD
421 PANADALAAL LKTHGLHVDA EEVLTLEGFC KLRRELDAQP SGFLDSRIRR FQSFAEISTE
481 PGPHFGLGLE AYATWTSPIR KYGDMINHRL LKAVIKGETI ARPREDITQQ MAERRRLNRM
541 AERDVGDWLY ARFLNDKAGT DTRFAAEIID VSRGGMRVRL VDNGAVAFIP ASFLHAVRDE
601 LVCSQENGTI QIKGETVYKV TDVIDVTIAE VRMDTRSIIA RPAA
//