LOCUS ABX21024.1 636 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-1070 PROTEIN_ID ABX21024.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_01118" /inference="protein motif:HMMSmart:IPR006555" /inference="protein motif:HMMSmart:IPR014001" /inference="protein motif:superfamily:IPR011034" /note="KEGG: sty:STY1951 0. putative ATP-dependent helicase K03722; COG: COG1199 Rad3-related DNA helicases" /transl_table=11 /db_xref="InterPro:IPR006555" /db_xref="InterPro:IPR011034" /db_xref="InterPro:IPR014001" BEGIN 1 MTDDFAADGQ LAQAITGFKP REPQRQMAVA VTQAIENAQP LVVEAGTGTG KTYAYLAPAL 61 RAGKKVIIST GSKALQDQLY SRDLPTVAKA LAFTGKTALL KGRSNYLCLE RLEQQALAGG 121 DLPVQTLSDV ILLRSWSNQT LDGDISTCVS VAEDSQAWPL VTSTNDNCLG GDCPLYKECF 181 VVKARKKAMD ADVVIVNHHL FLADMVVKES GFGELIPQAE VMIFDEAHQL PDIASQYFGQ 241 SLSSRQLLDL AKDITIAYRT ELKDTQQLQK CADRLAQSAQ DFRLQLGEPG YRGNLRELLT 301 DPRIQRAFLL LDDTLELCYD VAKLSLGRSA LLDAAFERAT LYRSRLKRLK EINQPGYSYW 361 YECTSRHFTL ALTPLTVADK FKEVMEQKPG SWIFTSATLS VNDDLRHFTA RLGIEQSESM 421 LLPSPFDYTR QALLCVPRNL PQTNQPGAAR QLAAMLRPII EANNGRCFML CTSHAMMRDL 481 AEQFRATMTL PVLLQGETSK GQLLQQFVSA GNALLVATSS FWEGVDVRGD TLSLVIIDKL 541 PFTSPDDPLL KARMEDCRLR GGDPFDEVQL PDAVITLKQG VGRLIRDADD RGVLVICDNR 601 LVMRPYGATF LASLPPAPRT RDIARAVRFL SIPSAG //