LOCUS ABX20686.1 1040 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-732 PROTEIN_ID ABX20686.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_00765" /inference="protein motif:FPrintScan:IPR001036" /inference="protein motif:HMMPfam:IPR001036" /note="KEGG: eci:UTI89_C2351 5.9e-253 yegO; hypothetical protein YegO K07789; COG: COG0841 Cation/multidrug efflux pump; Psort location: CytoplasmicMembrane, score:10.00" /transl_table=11 /db_xref="InterPro:IPR001036" BEGIN 1 MQVLPPGSTG GPSRLFILRP VATTLLMAAM LLAGIIGYRF LPVAALPEVD YPTIQVVTLY 61 PGASPDVMTS AVTAPLERQF GQMSGLKQMS SQSSGGASVV TLQFQLTLPL DVAEQEVQAA 121 INAATNLLPS DLPNPPIYSK VNPADPPIMT LAVTSNAVPM TQVEGMVETR VAQKISQVSG 181 VGLVTLAGGQ RPAVRVKLNA QAIAALGLTS ETIRTAITGA NVNSAKGSLD GPERAVTLSA 241 NDQMQSADEY RRLIIAYKNG APVRLGDVAT VEQGAENSWL GAWANKAPAI VMNVQRQPGA 301 NIIATADSIR QMLPQLTESL PKSVKVTVLS DRTTNIRASV RDTQFELMLA IALVVMIIYL 361 FLRNIPATII PGVAVPLSLI GTFAVMVFLD FSINNLTLMA LTIATGFVVD DAIVVIENIS 421 RYIEKGEKPL AAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAVTLAVAI 481 LISAVVSLTL TPMMCARMLS QQSLRKQNRF SRACERLFDR VIASYGRGLA KVLNHPWLTL 541 SVAFATLLLS VMLWIVIPKG FFPVQDNGII QGTLQAPQSS SYASMAQRQH QVAERILQDP 601 AVQSLTTFVG VDGANPTLNS ARLQINLKSL DERDDRVQQV ISRLQTAVAT IPGVALYLQP 661 TQDLTIDTQV SRTQYQFTLR ATTLDALSHW APKLLNALQS LPQLSEVSSD WQDRGLAAWV 721 NVDRDSASRL GISMADVDNA LYNAFGQRLI STIYTQANQY RVVLEHNTAN KPGLAALETI 781 RLTGNDGGTI PLSAIASIKQ RFTPLSINHL DQFPVTTFSF NVPEGYSLGD AVQAILNTER 841 TLALPADITT QFQGSTLAFQ AALGNTVWLI VAAVVAMYIV LGVLYESFIH PITILSTLPT 901 AGVGALLALM IAGSELDIIA IIGIILLIGI VKKNAIMMID FALAAEREQG MYPRDAIFQA 961 CLLRFRPILM TTLAALLGAL PLMLSTGVGA ELRRPLGIAM VGGLLVSQIL TLFTTPVIYL 1021 LFDRLSLYVK SRFPRHKEEA //