LOCUS ABX20184.1 3833 aa PRT BCT 09-NOV-2020
DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23:
- hypothetical protein protein.
ACCESSION CP000880-230
PROTEIN_ID ABX20184.1
SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4600800)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar
62:z4,z23:--Most bacteria in the species S. enterica belong to one
of seven subspecies; all but subspecies I normally grow only in
cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally
found in reptiles, but also causes outbreaks of salmonellosis in
turkeys and sheep and can occasionally produce both gastroenteritis
and serious disseminated disease in humans. Many human infections
can be traced to contact with reptiles or ingestion of various
reptile products, particularly from rattlesnakes. Fewer than ten
cases in humans are typically reported in the US each year.
The strain of S. Arizonae (62:z4,z23:-) being sequenced is
CDC346-86; it was named RSK2980 by R.K. Selander and is strain
SARC5 of the Salmonella Reference C set. This serovar is of
interest because of its taxonomic position. It appears to be the
most divergent subspecies among the S. enterica. It can be obtained
from the American Type Culture Collection as ATCC BAA-731, or the
Salmonella Genetic Stock Centre as SGSC4693. The genome was
sequenced to 8X coverage, using plasmid and fosmid libraries and
was finished to an error rate of less than 1 per 10,000 bases.
Automated annotation was performed and manual annotation will
continue in the labs of Michael McClelland and Kenneth Sanderson.
The National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. arizonae serovar
62:z4,z23:-"
/mol_type="genomic DNA"
/strain="RSK2980"
/serovar="62:z4,z23:-"
/sub_species="arizonae"
/culture_collection="ATCC:BAA-731"
/db_xref="taxon:41514"
protein /locus_tag="SARI_00238"
/inference="protein motif:superfamily:IPR008957"
/inference="protein motif:superfamily:IPR008964"
/inference="protein motif:superfamily:IPR008979"
/inference="protein motif:superfamily:IPR011048"
/inference="protein motif:superfamily:IPR011049"
/note="KEGG: chu:CHU_1906 3.9e-51 CHU large protein,
possible SAP or adhesin AidA-related K01238; COG: COG5295
Autotransporter adhesin"
/transl_table=11
/db_xref="InterPro:IPR008957"
/db_xref="InterPro:IPR008964"
/db_xref="InterPro:IPR008979"
/db_xref="InterPro:IPR011048"
/db_xref="InterPro:IPR011049"
BEGIN
1 MRLLAVVSKL TGVSTTVESS AVTLNAPSIV KLSVARDEIS QLTRINQDLM VTLHSGETIT
61 IKNFYVTNDL GASQLVLAES DGTLWWVENP QAGLHFEQIA DINELLVTSG ASHETGGAVW
121 PWVLAGAVAA GGIAAIASSG GGDSHHSDSD NPLPDNTNPG GNPPDNTNPD GNPPDNDNPG
181 GTNPDGNNPD SSNPVDTTPP LAPSELLISA DGKTVSGQAE AGSTITIKDP SGNVVGEGKT
241 DSNGKFSIDL TTPHLSGEQL TVTATDDAGN TGPSATIDAP NIPFPDTPII TAAIDNADPL
301 TGTLSNNQFT NDSTPTLEGT GSAGAVIHIY ANGQEIGTTT VDASGNWRFS ITNALTDGEN
361 RFTAIATNVK GESSESASFT LTIDTLSPDA PIVELITDNT GLLTGPLQNN DRTDEAKPLF
421 SGQGEPGNTI TIKEGSTIIG SATVDENGRW TFMPTTPLSN GEHTFTVEQS DQAGNVSRVT
481 TTPTIIVDTT PPDAAAIDNV AKDGSTVSGT AEAGSTVSIY DPAGNYLGSA ITGDNNQFNI
541 TLNPAQTHGE RLEARIQDAV GNIGPVTEFT ASDSQYPAQP IILTVTDDAG AVTGLLKNGD
601 ATDDNRPTLS GTAEPGSTIS ISDNGFPVPT FPLVVADADG KWSFTPSLAL PDGDHVFTAT
661 ATNDRGTSGQ SVSFTIDIDT QPPVLENLAV SDIGDKLTGA TEAGSTVVIK DSQGNMLGSG
721 TAGDDGTFSI SISPAKINGE TLSISVIDKA ANSGPVETLN APDKTAPAAP NGLIVATDGL
781 SVSGQAEAGS TVTIRDSSNT VLGSAVANGN GQFIVPLNTA QTNGQALIAT ATDVAKNESA
841 AATVIAPDST APEMPKDVVI SEDGASISGT AEPGSAITIT TSDGTPLGSG KVDGEGHFTL
901 PLVPAQTNGE QVTVTATDGA NNVSPPATAQ APDITAPDKP IISQVLDDVE SFTGPLANGQ
961 TTNDSRPTLS GTAEAGARVE VFDNGVSLGL ATLQSNGSWT FTPLQNLSEG AHRLTVIATD
1021 AKGNASPAAS FDLVVDTQSP QQPVITFITD DAPGMLGSIA HLGLTNDNTP TINGTGEPGS
1081 TVHLYQNGAR IADIIVGSSG VWSYAYTTAS PLVDDTYTFT VTASDSNGNT TPFSTDFTIT
1141 IDTLVPAAPG IISVADGDGN TIDTNQLTQE SQPRLSGSGT AGDTIILYDN GNIIGQALVG
1201 ADGRWQFTPP AALGDGTHLL TARANDPAGN ESPESISFTL RVDTQAPDAP QIVSAAIAGG
1261 EGEVLLANGS ITNQRMPTLS GTGEPGAIIT LYNNGAVLDT VQVNPQGSWT YPLTSNLSEG
1321 LNVLTAIAMD AAGNSSPTSG VFSVTLDTLP PAQPDAPLIS DNVAPVIGNI GNNGATNDTT
1381 PTFSGTGEIG STIILYNNGS EIGRTTVGDN GSWNFTPAAL TPGTYIITVT ETDVAGNISP
1441 PSASVTFAID ITAPANPVIT FAEDNVGDVQ DNVASGATTD DNTPVIHGTG DIGSVITLYN
1501 GGNVLGVATV DETGTWTLPV TSALPDGTYT LTAIAADAAG NSSGVSNSFT LTVDTVPLQP
1561 PVVSEILDDV APVTGPLTDG AFTNDRTLTI NGSGENGSTV TIYDNGIEIG TALVSDGTWT
1621 FNTPVLSEAS HALTFSATDG AGNTTAQTQP IIITIDVTAP PAPSIQTVAD DGTRVAGLAD
1681 PYATVEIRNA DDILVGSAVA NATGEFAVTL SPAQTDGGTL TAIALDRAGN NGPATDFLAS
1741 DSGLPAVPVI TAIEDNVGSV QGNIAAGGAT DDATPTLRGT TDIGSTVEVF IDGDSAGFAT
1801 VDASGNWIFE IATPLSESAH SVTVQATNAK GQGGLSEPVR ITIDLSAPAQ PIITSATDDV
1861 PGVTGTLDNG ALTNDSRPTL NGTGEAGATI RILDNGVEIG SATVDQSGNW RFTPNAPLES
1921 NTHLFTAVAT DPAGNSGQPS DGFTLTIDAL APDVPVIISV IDDNNQPSIP VSPGQSTDDR
1981 QPILNGTGEP GATITIFDNG TPLGTTQVNE SGSWSFPVTS NLSEGSHDLT VSATDPAGNT
2041 SAVSTPWTIV VDITPPAIPV LTSVVDDRPG ITGDLVSGQL TNDATPTLNG RGEAGATITV
2101 YLDGNPTPIG TTTVNSDGTW SFTPQTPIAN GNHTLTLSAT DPAGNSSAVS SGFVLTIDAT
2161 PPAAPVIASV ADNTAPVTGI VPNGGSTNET RPTLAGTGEA GSTISIYNGS ALVGTAQVQA
2221 NGSWSFTPPT SLSAGVWNLT ATATDAAGNT SVASETRTFT IDTTAPAAPV ISTVYDGTGP
2281 ITGNLSPGQM TDEVRPVISG TREANTTIRL YDNGTLLAEI PADNSSSWRY TPDASLATGN
2341 HVITVIAVDA AGNASPVSDS VNFVVDTTPP LAPVITSVSD DQAPGLGTIA NGQSTNDPTP
2401 TFSGTAEAGA TITLYENGTV IGTTTAQPDG AWSVSTSTLA SGTHVITAVA TDAAGNGSPN
2461 STAFTLTVDT TAPQTPILTS VVDDVAGGAT GNLANGQITN DNRPTLNGTA EAGSVVSIYD
2521 GGTLLGVTTA DAGGAWSFAP TTGLSDGTRT LTVTATDPAG NVSPVTDSFT IVVDTLAPTV
2581 PLITSIVDDV PNNTGAIGNG QSTNDTLPTL NGTAEANSTV SIFDNGALVA TVTANANGNW
2641 SWTPTTALGQ GSHAYSVSAA DAAGNVSAAS QPTTIIVDTI APGAPGNLTI NATGNRVTGT
2701 AEAGSTVTIT TDTGVVLGTA TADGTGSFSA ALTPAQTNGQ PLLAFAQDKA GNTGITAGFT
2761 APDTRVPEAP IITTVVDDVG IYTGAIANGQ VTNDAQPTLN GTAQAGATVS IYNNGALLGT
2821 TTANASGNWS FTPAGNLTEG SHAFTATATN ANGTGSVSTA ATVIVDTQAP GTPSGTLSAD
2881 GGSLSGLAEA NSTVTVTLAG GITLTTTAGS NGAWSLTLPT KQIEGQLINV TATDAAGNAS
2941 GTLGITAPIL PLAARDNITS LDLTSTADTS TQNYSDYGLL LVGALGNVAS VLGNDIAQVE
3001 FTIAEGGTGD VTIDAAATGI VLSLLSTQEI VVQRYDTSLG AWTTIVNTAV GDFANLLTLT
3061 GSGVTLNLSG LGEGQYRVLT YNTSLLATGS YTSLDVDVHQ TSAGIISGPT MSTGNVMADD
3121 TAPTGTTVTA ITNANGVSTP VGAGGVDIQG QYGTLHINQD GSYTYTLTNP TAGYGHKESF
3181 TYTITQNGVG SSSAQLVINL GPAPVPGSVV ATDNNASLVF DTHVSYVNNG PSTQSGVTVL
3241 SVGLGNVLNA NLLDDMTNPI IFNVEEGATR TMTLQGTVGG VSLASSFDLY VYRFNDAIQQ
3301 YEQFRVQKGW INTLLLAGQS QPLTLTLPGG EYLFVLNTAS GISVLTGYTL TISQDHTYAV
3361 DSITTSTTGN VLTNDVAPAD ALLTEVNGVA ISATGTTNVN GLYGTLTIDA KGNYTYTLKN
3421 GVGADSIKTP DSFIYTVKAP NGDTDTASLN ITPTARALDA INDVSDTLSV ATLQDTAAWL
3481 DSSVGSASWG LLGKSGSGSG TFDVATGTVL KGASLVFDVS TLITLGNLNI SWAILENGTV
3541 IRNGTVPVAN ITLGGATVTV NLSGLELDAG TYTLNFTGTN TLAGAATITP RVIGTTVDLD
3601 NFETSGTHTV LGNIFDGSDA AGAMDQLNTV NTRLNISGYN GSASTLDAST NTTSATIQGH
3661 YGTLQINLDG AYTYTLNNGI AISSITSKEV FTYQLDDKMG HTDSATLTID MVPQIVSTNQ
3721 NDVLIGSAYG DTLIYHLLNG ADATGGNGTD RWQNFSTAQG DKIDIHELLT GWDHQAATLG
3781 NFVQVHTSGA NTVISVDRDG AGSAFKSTDL VTLENVQLTL NDLLQNNHLV IGG
//