LOCUS ABV15895.1 657 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-4716 PROTEIN_ID ABV15895.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_04850" /inference="protein motif:Gene3D:IPR013780" /inference="protein motif:Gene3D:IPR013781" /inference="protein motif:Gene3D:IPR013783" /inference="protein motif:HMMPfam:IPR004193" /inference="protein motif:HMMPfam:IPR006047" /inference="protein motif:HMMPIR:IPR013779" /inference="protein motif:HMMSmart:IPR006589" /inference="protein motif:HMMTigr:IPR011837" /note="KEGG: sec:SC3467 0. glgX; glycosyl hydrolase K02438; COG: COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Psort location: Cytoplasmic, score:9.26" /transl_table=11 /db_xref="InterPro:IPR004193" /db_xref="InterPro:IPR006047" /db_xref="InterPro:IPR006589" /db_xref="InterPro:IPR011837" /db_xref="InterPro:IPR013779" /db_xref="InterPro:IPR013780" /db_xref="InterPro:IPR013781" /db_xref="InterPro:IPR013783" BEGIN 1 MTQLATGKAT PHGATYDGHG VNFTLFSAHA ERVELCVFDA LGNEQRYDLP GRSGDVWHGY 61 LADARPGLRY GYRVHGPWQP AQGHRFNPAK LLIDPCARRV EGELKDNPLL HGGYDEPDHR 121 DNAAVALKCV VTADRYDWED DAAPRTPWGN TVIYEAHVKG LTYLHPAIPS EIRGTWKALG 181 HPVMIAYFKQ LGITALELLP VAHFASEPRL QRLGLSNYWG YNPVAMFALH PAYACSPETA 241 LDEFRDAIKA LHKAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI KEDGDYHNWT 301 GCGNTLNLSH PGVVEFACEC LRYWVETCHV DGFRFDLASV MGRTPAFRQD APLFTAINNC 361 PVLSSVKLIA EPWDIGEGGY QVGNFPPPFA EWNDHFRDAA RRFWLQRNLP LGEFAGRFAG 421 SSDVFKRHDR LPNASVNLIT AHDGFTLRDC VCFNQKHNEA NGEENRDGTN NNYSDNHGKE 481 GLGGTLDLIE RRRDSIHALL TTLLLSQGTP MLLAGDEHGH SQHGNNNAYC QDNALTWLDW 541 QQANSGLTTF TAALIHLRQQ IPALVGNRWW EENDGNVRWL NKNAEPLSAG EWENGPKQMQ 601 ILLSDRFLIA INATLEVTDI VLPEGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR //