LOCUS ABV15246.1 1181 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-4067 PROTEIN_ID ABV15246.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_04185" /inference="protein motif:HMMPanther:IPR000212" /inference="protein motif:HMMPfam:IPR000212" /inference="protein motif:HMMTigr:IPR004586" /note="KEGG: stt:t2902 0. recB; exonuclease V subunit K03582; COG: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Psort location: CytoplasmicMembrane, score:9.27" /transl_table=11 /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR004586" BEGIN 1 MNDAAESLDP LRLPLTGERL IEASAGTGKT FTIAALYLRL LLGLGGSAAF PRRLTVEELL 61 VVTFTEAATE ELRGRIRSNI HELRIACLRE TTDNPLYARL LEEIEDKKQA AQWLLLAERQ 121 MDEAAVFTIH GFCQRMLSLN AFESGMLFEQ QLIEDESLLR YQACADFWRR HCYPLPREIA 181 QVVFEAWKGP RALLKDIDRY LQGEAPVIKA PPPSDETLAS RHEHILSRIN ALKQQWCASV 241 DELDGVIESS GIDRRKFNRG NQTKWIEKIT AWAQAETQTY QLPDALEKFS RRFLEERTKA 301 GGITPQHPLF VAIEELLAEP LTIKDLLITR ALAEIRETVA QEKQRRGELG FDDMLSRLDV 361 ALRSNSGDAL ASAIRGRFPV AMIDEFQDTD PQQYRIFRRI WRHQPDTALL LIGDPKQAIY 421 AFRGADIFTY MKARSEVSAH YTLDTNWRSA PGMVNSVNTL FSQMNDAFMF REIPFAPVKS 481 AQKNQSLRFV LNGETQPAMN MWLMEGESCG IGDYQSYMAQ VCATQIRDWL KAGQTGDALL 541 VSEKTSRPVR ASDISVLVRS RQEAAQIRDA LTLLAIPSVY LSNRDSVFET LEAQEMLWIL 601 QAVMTPEREN TLRSAMAASM MGLTAQDIET LNNDENAWDA VVEEFDGYRQ IWHKRGVMPM 661 LRALMSARNI AENLLATAGG ERRLTDILHI SELLQEAGSQ LESEHALVRW LSQHILEPDS 721 NAASQQLRLE SDKHLVKIVT IHKSKGLEYP LVWLPFITHF RVQDQAFYHD RNSFDAVLDL 781 SHAEESVELA EAERLAEDLR LLYVALTRSV WHCSLGVAPL VRRRGDKKGD TDVHQSALGR 841 LLQKGEPKDA AGLRACIDAL CGEDITCRTP AEPDSERWQV TEASRAALSA RALRRMPADN 901 WRVTSYSGLQ QQGHSVAQDL IPRLDVDAAG VGDVVEEPEL TPHQFPRGAS PGTFLHSLFE 961 DLDFTQPVDP AWVREKLELG GYDAHWEPVL TQWLDAVLQA PLTERGVSLR HLSAREKQVE 1021 MAFYLPIAQP LIASQLDALI RRFDPLSAGC PPLDFMQVRG MLKGFIDLVF RHEGRYYLLD 1081 YKSNWLGEDS TAYTQEAMAS AMQAHRYDLQ YQLYTLALHR YLRHRIADYD YERHFGGVIY 1141 LFLRGVDREY PRQGIFSTRP DGELIALMDE MFAGVVAEEA Q //