LOCUS ABV14406.1 968 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-3227 PROTEIN_ID ABV14406.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_03323" /inference="protein motif:HMMPfam:IPR000330" /inference="protein motif:HMMPfam:IPR001650" /inference="protein motif:HMMSmart:IPR001650" /inference="protein motif:HMMSmart:IPR014001" /note="KEGG: sec:SC0091 0. hepA; RNA polymerase associated protein, putative SNF2 family RNA helicase K03580; COG: COG0553 Superfamily II DNA/RNA helicases, SNF2 family; Psort location: Cytoplasmic, score:8.96" /transl_table=11 /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" BEGIN 1 MPFTLGQRWI SDTESELGLG TVVAMDARTV TLLFPATGEN RLYARSDSPV TRVMFNPGDT 61 ITSHEGWQLQ IDEVKEENGL LAYTGTRLDT EETAVTLREV LLDSKLVFSK PQDRLFAGQI 121 DRMDRFALRY RARKFQSEQY RMPWSGLRGQ RTSLIPHQLN IAHDVGRRHA PRVLLADEVG 181 LGKTIEAGMI LHQQLLSGAA ERVLIIVPET LQHQWLVEML RRFNLRFALF DDERYTEAQH 241 DAYNPFETEQ LVICSLDFAR RNKQRLEHLC DAQWDLLVVD EAHHLVWSED APSREYMAIE 301 QLAERVPGVL LLTATPEQLG MESHFARLRL LDPSRFHDFE QFVEEQKNYR PVADAVAMLL 361 AGNKLSNEEL NMLGDLIGEQ DIEPLLQTAN SDRDGAQNAR QELVSMLMDR HGTSRVLFRN 421 TRNGVKGFPK RELHTIKLPL PTQYQTAIKV SGIMGARKSA EDRARDMLYP EQIYQEFEGD 481 SGTWWNFDPR VEWLMGHLTS HRSQKVLVIC AKAATALQLE QVLREREGIR AAVFHEGMSI 541 IERDRAAAWF SEEDSGAQVL LCSEIGSEGR NFQFASNLVM FDLPFNPDLL EQRIGRLDRI 601 GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD AFEHTCPTGR AIYDTVYHDL IAYLATPENT 661 DGFDALIKTC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ ALAESIEEQD DDTSLIAFAM 721 NLFDIVGINQ DDRGENLIVL TPSDHMLVPD FPGLPEDGCT ITFERDVALS REDAQFVTWE 781 HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELVY VVEAQAPKHL QLNRFLPPTP 841 VRMLLDKNGN NLAAQVEFET FNRQLSAVNR HTGSKLVNAV QQDVHAILQL GEAQAEKSAR 901 ALIDAARSEA DEKLSAELSR LEALRAVNPN IRDDELAAID SNRQQVMESL DQANWRLDAL 961 RLIVVTHQ //