LOCUS ABV14267.1 1144 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-3088 PROTEIN_ID ABV14267.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_03182" /inference="protein motif:HMMPfam:IPR004013" /inference="protein motif:HMMPfam:IPR004365" /inference="protein motif:HMMPfam:IPR011708" /inference="protein motif:HMMSmart:IPR003141" /inference="protein motif:HMMTigr:IPR004805" /inference="protein motif:superfamily:IPR008994" /note="KEGG: sec:SC0231 0. dnaE; DNA polymerase III, alpha subunit K02337; COG: COG0587 DNA polymerase III, alpha subunit; Psort location: Cytoplasmic, score:9.97" /transl_table=11 /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004805" /db_xref="InterPro:IPR008994" /db_xref="InterPro:IPR011708" BEGIN 1 MIDGLAKTGP LVKKAAALGM PALAITDFTN LCGLVKFYGT GHGAGIKPIV GADFHVRGTP 61 LGDELCQLTV LAANNTGYQN LTLLISKAYQ RGYGAEGPVI DREWLTELKD GLILLSGGRM 121 GDVGRSLLRG NSALVDECVA FYEEHFSDRY YLELIRTGRQ DEETYLHAAV ELAETRGLPV 181 VATNDVRFIN SEDFDAHEIR VAIHDGFTLD DPKRPRNYSP QQYMRSEDEM CELFSDIPEA 241 LENSVEIAKR CNVTVRLGEY FLPQFPTGDM TTEDFLVKKS KEGLEERLEF LFPDEAVRKE 301 KRPPYDERLD IELQVINQMG FPGYFLIVME FIQWSKDNGV PVGPGRGSGA GSLVAYALKI 361 TDLDPLEFDL LFERFLNPER VSMPDFDVDF CMEKRDQVIE HVADMYGRDA VSQIITFGTM 421 AAKAVIRDVG RVLGHPYGFV DRISKLVPPD PGMTLAKAFE AEPQLPEIYE ADEEVKALID 481 MARKLEGVTR NAGKHAGGVV IAPTKITDFA PLYCDEAGQH PVTQFDKNDV EYAGLVKFDF 541 LGLRTLTIIN WALEMINARR EKNGEPPLDI AAIPLDDKKS FDMLQRSETT AVFQLESRGM 601 KDLIKRLQPD CFEDMIALVA LFRPGPLQSG MVDNFIDRKH GREEISYPDV QWQHESLKPV 661 LEPTYGIILY QEQVMQIAQV LSGYTLGGAD MLRRAMGKKK PEEMAKQRSV FEEGARKNGI 721 DGELAIKIFD LVEKFAGYGF NKSHSAAYAL VSYQTLWLKA HYPAEFMAAV MTADMDNTEK 781 VVGLVDECWR MGLKILPPDI NSGLYHFHVN DDGEIVYGIG AIKGVGEGPI EAIIEARNKD 841 GYFRELFDLC ARTDTKKLNR RVLEKLIMSG AFDRLGPHRA ALMNSLGDAL KAADQHAKAE 901 AIGQADMFGV LAEEPEQIEQ SYASCQPWPE QVVLDGERET LGLYLTGHPI NQYLKEIERY 961 VGGYRLKDMH PTERGKVTTA AGLVIAARVM VTKRGNRIGI CTLDDRSGRL EVMLFTDALD 1021 KYQQLLEKDR ILIVSGQVSF DDFSGGLKMM AREVMDIDEA REKYARGLAI SLTDRQIDDQ 1081 LLNRLRQSLE PHRSGTIPVH LYYQRADARA RLRFGATWRV SPSDRLLNDL RGLIGSEQVE 1141 LEFD //