LOCUS ABV13931.1 1025 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-2752 PROTEIN_ID ABV13931.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_02825" /inference="protein motif:FPrintScan:IPR006101" /inference="protein motif:Gene3D:IPR004199" /inference="protein motif:Gene3D:IPR013781" /inference="protein motif:Gene3D:IPR013812" /inference="protein motif:HMMPfam:IPR004199" /inference="protein motif:HMMPfam:IPR006102" /inference="protein motif:HMMPfam:IPR006103" /inference="protein motif:HMMPfam:IPR006104" /inference="protein motif:ScanRegExp:IPR006101" /inference="protein motif:superfamily:IPR006102" /inference="protein motif:superfamily:IPR008979" /inference="protein motif:superfamily:IPR011013" /note="KEGG: eci:UTI89_C0371 0. lacZ; beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase" /transl_table=11 /db_xref="InterPro:IPR004199" /db_xref="InterPro:IPR006101" /db_xref="InterPro:IPR006102" /db_xref="InterPro:IPR006103" /db_xref="InterPro:IPR006104" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR011013" /db_xref="InterPro:IPR013781" /db_xref="InterPro:IPR013812" BEGIN 1 MPQNADSLAV VLKCRDWENP GVTQLNRLEA HPPFCSWRNA DDARVNRDSA QKRSLNGEWT 61 FAWFSAPEAV PESWRTSDLQ QADSVRVPSN WQMDGYDAPI YTNVTYPIPV NPPFVPADNP 121 TGCYSLTFSI DADWLQAGQT RIIFDGVNSA FHLWCNSRWV GYGQDSRLPS EFDLTHFLLK 181 GENRLAVMVL RWSDGSYLED QDMWRMSGIF RDVSLLHKPA TQIRDLRINT RFNDDFSRAV 241 LEAEVRTTGE RRDDLRVTVQ LWDSETFVGE KTAPLGSEII DERGAYPDRT TLRLNVEHPA 301 LWSAETPHLY RAVVQLHAAD GTLIEAEACD VGFRQVSIEN GLLLLNGKPL LIRGANRHEH 361 HPENGQVMDK ETMIKDILLM KQNNFNAVRC SHYPNHPLWY TLCDRYGLYV VDEANIETHG 421 MVPMNRLSDD PVWLPAMSQR VTRMVQRDRN HPSIIIWSLG NESGHGANHD ALYRWIKSED 481 PSRPVQYEGG GANTAATDII CPMYARVDQD QPFPAVPKWS IKKWLSMPGE QRPLILCEYA 541 HAMGNSLGGY AKYWQAFRQY PRLQGGFVWD WVDQSLIKYD DDGRPWSAYG GDFGDAPNDR 601 QFCMNGLVFA DRTPHPSLYE AKHAQQFFQF ALLPGAECQI EVTSEYLFRH SDNEVLHWSL 661 ALDGNPLTAG VVTLDIPPQG RQIIALPALP EAETAGQLWL TVRVEQPQAT AWSQAGHISA 721 WQQWKLGEKL ATQWPQHAGN APQLTSSGTA FRIVAGEKRW EFSRQQGVLT QFWIGEEAQL 781 LTPLVDQFTR APLDNDIGVS EATRIDPNAW VERWKAAGHY QAKAVLLQCD ADTLASAVLI 841 TTAHAWQYQG ETLFISRKTY RIDGNGEMQI TVDVDVASGT PHPARIGLSC QLAQVAERVN 901 WLGLGPHENY PDRLSAACFE RWDLPLEEMY TPYVFPSENG LRCGTRELLY GAHQWRGDFQ 961 FNISRYGQKQ LMETSHRHLL QPEAGTWLNI DGFHMGVGGD DSWSPSVSAE YQLSAGRYHY 1021 QISWR //