LOCUS ABV13301.1 814 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-2122 PROTEIN_ID ABV13301.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_02177" /inference="protein motif:HMMPfam:IPR006656" /inference="protein motif:HMMPfam:IPR006657" /inference="protein motif:HMMPfam:IPR006963" /inference="protein motif:HMMTigr:IPR006311" /inference="protein motif:HMMTigr:IPR011888" /inference="protein motif:ScanRegExp:IPR006655" /inference="protein motif:superfamily:IPR009010" /note="KEGG: sec:SC0918 0. dmsA; anaerobic dimethyl sulfoxide reductase, subunit A K07306; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Periplasmic, score:9.76" /transl_table=11 /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR009010" /db_xref="InterPro:IPR011888" BEGIN 1 MKTNIPDAVL AAEVTRRGLV KTTAIGGLAI ASSVLTLPFT RIANAADAIS PNASSEKIIW 61 SACTVNCGSR CPLRMHVVDG EIKYVETDNT GDDNYDGLHQ IRACLRGRSM RRRVYNPDRL 121 KYPMKRVGKR GEGKFERISW DEAYDIITTN MQRLIKDYGN ESIYLNYGTG TLGGTMTRSW 181 PPGKTLVARL MNCCGGYLNH YGDYSSAQIA AGLNYTYGGW ADGNSPSDIE NSKLVVLFGN 241 NPGETRMSGG GVTYYLEQAR QKSNARMIII DPRYTDTGAG REDEWIPIRP GTDAALVNAL 301 AYVMITEDMV DQPFLDKYCV GYDEKTLPAS APKNGHYKAY ILGQGRDGTA KTPEWASQIT 361 GIPATRIVKL AREIGSAKPA YISQGWGPQR HANGEIVTRA ISMLAILTGN VGINGGNSGA 421 REGSYDLPFE RMPTLENPVE TSISMFLWTD AIERGPEMTA LRDGVRGKDK LDVPIKMIWN 481 YAGNCLINQH SEINRTHEIL QDDKKCEMIV VIDCHMTSSA KYADILLPDC TASEQMDFAL 541 DASCGNMSYV IFTDQAIKPR FECKTIYQMT SELAKRLGVE QQFTEGRTQE EWMRHLYEQS 601 RQAIPELPTF EAFRKQGIFK QRDPEGHHVA YKAFRDDPQA NPLTTPSGKI EIYSQALAEI 661 AATWELPEGD VIDPLPIYTP GFENYSDPLT KDYPLQLTGF HYKSRVHSTY GNVDVLKASC 721 RQEMWINPMD AQKRGISNGD KVRIFNGRGE LHIEAKVTPR MMPGVVALGE GAWYDPDAKR 781 VDQGGCINVL TTQRPSPLAK GNPSHTNLVQ VEKV //