LOCUS ABV12441.1 1247 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-1262 PROTEIN_ID ABV12441.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_01301" /inference="protein motif:HMMPfam:IPR006656" /inference="protein motif:HMMPfam:IPR006657" /inference="protein motif:HMMPfam:IPR006963" /inference="protein motif:HMMTigr:IPR006468" /inference="protein motif:ScanRegExp:IPR006655" /inference="protein motif:superfamily:IPR009010" /note="KEGG: spt:SPA1109 0. narG; respiratory nitrate reductase 1 alpha chain K00370; COG: COG5013 Nitrate reductase alpha subunit" /transl_table=11 /db_xref="InterPro:IPR006468" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR009010" BEGIN 1 MSKFLDRFRY FKQKGETFAD GHGQLLETNR DWEDGYRQRW QHDKVVRSTH GVNCTGSCSW 61 KIYVKNGLVT WETQQTDYPR TRPDMPNHEP RGCPRGASYS WYLYSANRLK YPLMRKRLMK 121 MWRDAKKLHS DPVEAWASII EDADKAKSFK QARGRGGFVR SSWQEVNELI AASNVYTIKN 181 YGPDRVAGFS PIPAMSMVSY ASGARYLSLI GGTCLSFYDW YCDLPPASPQ TWGEQTDVPE 241 SADWYNSSYI IAWGSNVPQT RTPDAHFFTE VRYKGTKTVA VTPDYAEIAK LCDLWLAPKQ 301 GTDAAMALAM GHVMLREFHL DNPSQYFTDY VRRYTDMPML VMLEERDGYY AAGRMLRAAD 361 LIDALGQENN PEWKTVAINT RGDMVAPNGS IGFRWGEKGK WNLEQRDGTS GEETELQLSL 421 LGSQDDIAEV GFPYFGGEGT EHFNKVELQN VLLHKLPVKR LQLADGTTAL VTTVYDLTMA 481 NYGLERGLND ENCATSYDDI KAYTPAWAEQ ITGVPRAQIT RIAREFADNA DKTHGRSMII 541 VGAGLNHWYH LDMNYRGLIN MLVFCGCIGQ SGGGWAHYVG QEKLRPQTGW QPLAFALDWQ 601 RPARHMNSTS YFYNHSSQWR YETVTAQELL SPMADKSRYS GHLIDFNVRA ERMGWLPSAP 661 QLGTNPLYIA REAEKAGMTA VDYTVKSLKE GSIRFAAEQP ENGKNHPRNL FIWRSNLLGS 721 SGKGHEYMLK YLLGTENGIQ GKDLGMQGGV KPEEVEWQDN GLDGKLDLVV TLDFRLSSTC 781 LYSDIVLPTA TWYEKDDMNT SDMHPFIHPL SAAVDPAWES KSDWEIYKGI AKKFSEVCVG 841 HLGKETDVVT LPIQHDSAAE LAQPLDVKDW KKGECDLIPG KTAPHIIPVE RDYPATYERF 901 TSIGPLMEKI GNGGKGIAWN TQSEMDLLRK LNYTKAEGPA KGQPMLNTAI DAAEMILTLA 961 PETNGHVAVK AWAALSEFTG RDHTHLATNK EEEKIRFRDI QAQPRKIISS PTWSGLEDEH 1021 VSYNAGYTNV HELIPWRTLS GRQSLYQDHQ WMRDFGESLL VYRPPIDTRS VKAVMGEKSN 1081 GNPEKALNFL TPHQKWGIHS TYSDNLLMLT LSRGGPIVWM SETDAKDLGI EDNDWIEVFN 1141 SNGALTARAV VSQRVPAGMT MMYHAQERIV NLPGSEITQQ RGGIHNSVTR ITPKPTHMIG 1201 GYAQLAYGFN YYGTVGSNRD EFVVVRKMKN INWLDGEGND QVQESVK //