LOCUS ABV12433.1 1355 aa PRT BCT 31-JAN-2014
DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION CP000822-1254
PROTEIN_ID ABV12433.1
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Citrobacter koseri ATCC BAA-895"
/mol_type="genomic DNA"
/strain="ATCC BAA-895"
/db_xref="ATCC:BAA-895"
/db_xref="taxon:290338"
protein /locus_tag="CKO_01293"
/inference="protein motif:BlastProDom:IPR001327"
/inference="protein motif:FPrintScan:IPR001100"
/inference="protein motif:FPrintScan:IPR006066"
/inference="protein motif:FPrintScan:IPR013027"
/inference="protein motif:HMMPfam:IPR001327"
/inference="protein motif:HMMPfam:IPR005117"
/inference="protein motif:HMMPfam:IPR006067"
/inference="protein motif:HMMPfam:IPR007419"
/inference="protein motif:HMMPfam:IPR013027"
/inference="protein motif:HMMTigr:IPR012744"
/inference="protein motif:HMMTigr:IPR012748"
/inference="protein motif:ScanRegExp:IPR006066"
/inference="protein motif:ScanRegExp:IPR010916"
/note="KEGG: eca:ECA2991 0. nasB; nitrite reductase
[NAD(P)H] large subunit K00362; COG: COG2146 Ferredoxin
subunits of nitrite reductase and ring-hydroxylating
dioxygenases; Psort location: Cytoplasmic, score:9.26"
/transl_table=11
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR005117"
/db_xref="InterPro:IPR006066"
/db_xref="InterPro:IPR006067"
/db_xref="InterPro:IPR007419"
/db_xref="InterPro:IPR010916"
/db_xref="InterPro:IPR012744"
/db_xref="InterPro:IPR012748"
/db_xref="InterPro:IPR013027"
BEGIN
1 MTQRLVIIGN GMAATRLVEA LLAQAPQAFT ITVVGEEPQH AYNRIQLSPV LGGEKRFAQT
61 LLHPPEWYQR HGVTVLTGET VIAVDAIART ATTTGRTLAW DALVFATGSV PFIPPIPGAN
121 LPHVHAFRTI NDVDSILHGC GPVAVLGGGV LGVEAAAALR LKGDNVTLIH RGNRFMEQQL
181 DEQAGELLAE HLNARGIDCV LSSGIDRITP DDVTLTNGCV LSATRVVIAT GVKPNTALAQ
241 ASGVLCQRGI VVDGQLRTAV AGISAIGECC EIDGQTWGLV APCLAHAEVL AARLAGTPGA
301 DFHWQDSGTR LKVTGIDLFS AGEVNATAGD DLLRTFDPLS GHYRRLLIRN GRLQGVLLMG
361 DCRSAAPLTD LLAQAASANP DWLFDRFDTQ PAAAGQVTMT KPTLAVVGHG MVGHHFLEQC
421 VSRNLHLDYQ IVVFGEERYA AYDRVHLSEY FAGRSAESLS LVEGDFFARH GIELRLSQCV
481 TAIDRDARVI RTASGHETHW DKLVLATGSY PFVPPVKGGD SAACFVYRTL DDLDAIAAKA
541 KHSRRGVVIG GGLLGLEAAN ALRQLGLETH VVEFAPSLMA VQLDNAGAAM LREKIEALGV
601 SVHTSKSTAE IVSTPQGLQL VFTDSERLET DMVVFSAGIR PQDALARGAG LRIGERGGVC
661 IDNHCLTSDA DVFAIGECAL WDGRVFGLVA PGYQMARVAA AQLAGEDAAF SGADMSTKLK
721 LLGVDVASFG DAQGRTPGAQ SYQWTHGPEQ IYKKIVVSAD GKTLLGGVLV GDAADYATLL
781 QMMLNGMALP GQPESLILPA LAGSAPKALG VAALPDSAQI CSCHNVSKAD ICQAVSAGAT
841 EMGAIKQCTK AATGCGGCSA LVKQVMEFQL AAQGVEVKKD ICEHFAYSRQ EIYHLVRVNR
901 IHTFEQLISR YGRGHGCEIC KPLVGSVLAS CWNEYLLKPA HLPLQDTNDR YFANIQKDGS
961 YSVVPRMAAG EVTPDGLIAI GEIAKRYQLY SKITGGQRID LFGARLEQLP DIWRDLVTAG
1021 FETGHAYGKS LRTVKSCVGS TWCRYGVQDS TGLAVTLENR YKGLRAPHKI KMAVSGCTRE
1081 CAEAQGKDVG VIATDKGWNL YVCGNGGMKP RHADLFASDL DDATLIKFVD RFLMFYIRTA
1141 DRLQRTSTWM DNLEGGIDYL REVVIHDSLG IGDELEQEMA RIVETYQCEW QTTLNDPQRL
1201 ALFRASVNGD EPDEAVARQM LRGQPQLAKP AAPARTILPT KPWQEVCQLE EIPEQAGIGA
1261 RLGNLQIALF RFGQTIYALD NHEPGSDANV LSRGILGDAG GEPVVISPLY KQRIRLRDGR
1321 QYDSGEPVVR AWPVKVEAGK VWVGNQALLL RAEAS
//