LOCUS ABV12388.1 2035 aa PRT BCT 31-JAN-2014
DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION CP000822-1209
PROTEIN_ID ABV12388.1
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Citrobacter koseri ATCC BAA-895"
/mol_type="genomic DNA"
/strain="ATCC BAA-895"
/db_xref="ATCC:BAA-895"
/db_xref="taxon:290338"
protein /locus_tag="CKO_01248"
/inference="protein motif:Gene3D:IPR009081"
/inference="protein motif:HMMPfam:IPR000873"
/inference="protein motif:HMMPfam:IPR001242"
/inference="protein motif:HMMPfam:IPR006163"
/inference="protein motif:HMMPfam:IPR013217"
/inference="protein motif:HMMPfam:IPR013624"
/inference="protein motif:HMMTigr:IPR010071"
/inference="protein motif:ScanRegExp:IPR000873"
/inference="protein motif:ScanRegExp:IPR002047"
/inference="protein motif:ScanRegExp:IPR006162"
/inference="protein motif:superfamily:IPR009081"
/note="KEGG: bur:Bcep18194_B0672 4.1e-190 non-ribosomal
peptide synthetase modules K01776; COG: COG3433 Aryl
carrier domain"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR002047"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR009081"
/db_xref="InterPro:IPR010071"
/db_xref="InterPro:IPR013217"
/db_xref="InterPro:IPR013624"
BEGIN
1 MISGAPSQDS LLPDNRHAAD YQQLRERLIQ ELNLTPQQLH EESNLIQAGL DSIRLMRWLH
61 WFRKNGYRLT LRELYAAPTL AAWNQLMLSR SPENAEEETP PDESSWPNMT ESTPFPLTPV
121 QHAYLTGRMP GQKLGGVGCH LYQEFEGHCL TASQLEQAIT TLLQRHPMLH IAFRPDGQQV
181 WLPQPYWNGV TVHDLRHNDA ESRQAYLDAL RQRLSHRLLR VEIGETFDFQ LTLLPDNHHR
241 LHVNIDLLIM DASSFTLFFD ELNALLAGES LPAIDTRYDF RSYLLHQQKI NQPLRDDARA
301 YWLAKASTLP PAPVLPLACE PATLREVRNT RRRMIVPATR WHAFSNRAGE YGVTPTMALA
361 TCFSAVLARW GGLTRLLLNI TLFDRQPLHP AVGAMLADFT NILLLDTACD GDTVSNLARK
421 NQLTFTEDWE HRHWSGVELL RELKRQQRYP HGAPVVFTSN LGRSLYSSRA ESPLGEPEWG
481 ISQTPQVWID HLAFEHHGEV WLQWDSNDAL FPPALVETLF DAYCQLINQL CDDESAWQKP
541 FADMMPASQR AIRERVNATG APIPEGLLHE GIFRIALQQP QALAVTDMRY QWNYHELTDY
601 ARRCAGRLIE CGVQPGDNVA ITMSKGAGQL VAVLAVLLAG AVYVPVSLDQ PAARREKIYA
661 DASVRLVLIC QHDASAGSDD IPVLAWQQAI EAEPIANPVV RAPTQPAYII YTSGSTGTPK
721 GVVISHRGAL NTCCDINTRY QVGPHDRVLA LSALHFDLSV YDIFGVLRAG GALVMVMENQ
781 RRDPHAWCEL IQRHQVTLWN SVPALFDMLL TWCEGFADAT PENLRAVMLS GDWIGLDLPA
841 RYRAFRPQGQ FIAMGGATEA SIWSNACEIH DVPAHWRSIP YGFPLTNQRY RVVDEQGRDC
901 PDWVPGELWI GGIGVAEGYF NDPLRSEQQF LTLPDERWYR TGDLGCYWPD GTIEFLGRRD
961 KQVKVGGYRI ELGEIESALS QLAGVKQATV LAIGEKEKTL AAYVVPQGEA FCITDHRNPA
1021 LPQAWHTLAG TLPCCAISPE ISAEQVADFL QHRLLKLKPG HTAGADPLPL MNSLAIQPRW
1081 QAVVERWLAF LVTQRRLKPA AEGYQVCAGE EREDEHPHFS GHDLTLSQIL RGARNELSLL
1141 NDAQWSPESL AFNHPASAPY IQELATICQQ LAQRLQRPIR LLEVGTRTGR AAESLLAQLN
1201 AGQIEYVGLE QSQEMLLSAR QRLAPWPGAR LSLWNADTLA AHAHSADIIW LNNALHRLLP
1261 EDPGLLATLQ QLAVPGALLY VMEFRQLTPS ALLSTLLLTN GQPEALLHNS ADWAALFSAA
1321 AFNCQHGDEV AGLQRFLVQC PDRQVRRDPR QLQAALAGRL PGWMVPQRIV FLDALPLTAN
1381 GKIDYQALKR RHTPEAENPA EADLPQGDIE KQVAALWQQL LSTGNVTRET DFFQQGGDSL
1441 LATRLTGQLH QAGYEAQLSD LFNHPRLADF AATLRKTDVP VEQPFVHSPE DRYQPFALTD
1501 VQQAYLVGRQ PGFALGGVGS HFFVEFEIAD LDLTRLETVW NRLIARHDML RAIVRDGQQQ
1561 VLEQTPPWVI PAHTLHTPEE ALRVREKLAH QVLNPEVWPV FDLQVGYVDG MPARLWLCLD
1621 NLLLDGLSMQ ILLAELEHGY RYPQQLLPPL PVTFRDYLQQ PSLQSPNPDS LAWWQAQLDD
1681 IPPAPALPLR CLPQEVETPR FARLNGALDS TRWHRLKKRA ADAHLTPSAV LLSVWSTVLS
1741 AWSAQPEFTL NLTLFDRRPL HPQINQILGD FTSLMLLSWH PGESWLHSAQ SLQQRLSQNL
1801 NHRDVSAIRV MRQLAQQQNV PAVPMPVVFT SALGFEQDNF LARRNLLKPV WGISQTPQVW
1861 LDHQIYESEG ELRFNWDFVA ALFPAGQVER QFEQYCALLN RMAEDESGWQ LPLAALVPPV
1921 KHAGQCAERS PRVCPEQSQP HIAADESTVS LICDAFREVV GESVTPAENF FEAGATSLNL
1981 VQLHVLLQRH EFSTLTLLDL FTHPSPAALA DYLAGVATVE KTKRPRPVRR RQRRI
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