LOCUS ABV12387.1 3163 aa PRT BCT 31-JAN-2014
DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION CP000822-1208
PROTEIN_ID ABV12387.1
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Citrobacter koseri ATCC BAA-895"
/mol_type="genomic DNA"
/strain="ATCC BAA-895"
/db_xref="ATCC:BAA-895"
/db_xref="taxon:290338"
protein /locus_tag="CKO_01247"
/inference="protein motif:Gene3D:IPR001227"
/inference="protein motif:Gene3D:IPR009081"
/inference="protein motif:HMMPanther:IPR000794"
/inference="protein motif:HMMPfam:IPR000794"
/inference="protein motif:HMMPfam:IPR001031"
/inference="protein motif:HMMPfam:IPR001227"
/inference="protein motif:HMMPfam:IPR001242"
/inference="protein motif:HMMPfam:IPR006163"
/inference="protein motif:HMMPfam:IPR013217"
/inference="protein motif:HMMPfam:IPR013624"
/inference="protein motif:HMMPfam:IPR013968"
/inference="protein motif:ScanRegExp:IPR000794"
/inference="protein motif:ScanRegExp:IPR006162"
/inference="protein motif:superfamily:IPR009081"
/note="KEGG: eci:UTI89_C2184 0. irp1; HMWP1 nonribosomal
peptide/polyketide synthase K04786; COG: COG3319
Thioesterase domains of type I polyketide synthases or
non-ribosomal peptide synthetases"
/transl_table=11
/db_xref="InterPro:IPR000794"
/db_xref="InterPro:IPR001031"
/db_xref="InterPro:IPR001227"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR009081"
/db_xref="InterPro:IPR013217"
/db_xref="InterPro:IPR013624"
/db_xref="InterPro:IPR013968"
BEGIN
1 MDNLRFSSAP TADSIDASIA QHYPDCEPVA VIGYACHFPE SPDGETFWQN LLEGRECSRR
61 FTREELLAVG LDAAIIDDPH YVNIGTVLDN ADCFDATLFG YSRQEAESMD PQQRLFLQAV
121 WHALEHAGYA PGAVPHKTGV FASSRMSTYP GREALNVTEV AQVKGLQSLM GNDKDYIATR
181 AAYKLNLHGP ALSVQTACSS SLVAVHLACE SLRAGESDMA VAGGVALSFP QQAGYRYQPG
241 MIFSPDGHCR PFDASAEGTW AGNGLGCVVL RRLRDALLSG DPIISVILSS AVNNDGNRKV
301 GYTAPSVAGQ QAVIEEALML AAIDDRQVGY IETHGTGTPL GDAIEIEALR NVYAPRPQDQ
361 RCALGSVKSN MGHLDTAAGI AGLLKTVLAV NRGQIPPLLN FHTPNPALKL EESPFTIPVS
421 AQAWQDEMRY AGVSSFGIGG TNCHMIVASL PDALNARLPN TDSGRKSTAL LLSAASDSAL
481 RRLATDYAGA LRENADASSL AFTALHARRL DLPFRLAAPL NRETAEALSA WAGEKSGALV
541 YSGHGASGKQ VWLFTGQGSH WRTMGQTMYQ HSTAFADTLD RCFSACSEML TPSLREAMFN
601 PDSAQLDNMA WAQPAIVAFE IAMAAHWRAE GLKPDFAIGH SVGEFAAAVV CGHYTIEQVM
661 PLVCRRGALM QQCASGAMVA VFADEDTLMP LARQFELDLA ANNGTQHTVF SGPEARLAVF
721 CATLSQHDIN YRRLSVTGAA HSALLEPILD RFQDACAGLH AEPGQIPIIS TLTADVIDES
781 TLNQADYWRR HMRQPVRFIQ SIQVAHQLGA RVFLEMGPDA QLVACGQREY RDNAYWIASA
841 RRNKEASDVL NQALLQLYAA GVALPWADLL AGDGQRIAAP CYPFDTERYW KERVSPACEP
901 ADAALSAGLE VASRAATALD LPRLEALKQC ATRLHAIYVD QLVQRCTGDA IENGVDAMTI
961 MRRGRLLPRY QQLLQRLLNN CVVDGDYRCT DGRYVRARPI EHQQRESLLT ELAGYCEGFQ
1021 AIPDTIARAG DRLYEMMSGA EEPVAIIFPQ SASDGVEVLY QEFSFGRYFN QIAAGVLRGI
1081 VQTRQPRQPL RILEVGGGTG GTTAWLLPEL NGVPALEYHF TDISALFTRR AQQKFADYDF
1141 VKYSELDLEK EAQSQGFQAQ SYDLIVAANV IHATRHIGRT LDNLRPLLKP GGRLLMREIT
1201 QPMRLFDFVF GPLVLPLQDL DAREGELFLT TAQWQQQCRH AGFSKVAWLP QDGSPTAGMS
1261 EHIILATLPG QAVSAVTFTA PSEPVLGQAL TDNGDYLADW SDCAGQPERF NARWQEAWRL
1321 LSQRHGDALP VEPPPVAAPE WLEEVRLSWQ NEAFSRGQMR VEARHPDGEW LPLSPTAPLP
1381 APQTHYQWRW TPLNVASVDH PLTFSFSTGT LARSDELAQY GIIHDPHASS RLMIVEESED
1441 TLALAEKVIA ALTASAAGLI VVTRRAWRVE ENEALSASHH ALWALLRVAA NEQPERLIAA
1501 IDLAENTPWE TLHQGLSAVS LSQRWLAARG DTLWLPSLAP NTGCAAELPA NVFIGDNRWH
1561 LVTGAFGGLG RLAVNWLREK GARRIALLAP RVDESWLRDV EGGQTRVCRC DVGDAGQLAT
1621 VLDDLAANGG IAGAIHAAGV LADAPLQELD DHQLAAVFAV KAQAANQLLQ TLRNHDGRYL
1681 ILYSSAAATL GAPGQSAHAL ACGYLDGLAQ QFSTLDAPKT LSVAWGAWGE SGRAATPEML
1741 VTLASRGMGA LSDAEGCWHL EQAVMRGAPW RLAMRVFTDK MPPLQQALFN ISATEKAATP
1801 VIPPADDNAF NGSLSDETAV MAWLKKRIAV QLRLSDPASL RPNQDLLQLG MDSLLFLELS
1861 SDIQHYLGVR INAERAWQDL SPHGLTQLIC SKPETTPAAS QPEVLRHDAD ERYAPFPLTP
1921 IQHAYWLGRT HLIGYGGVAC HVLFEWDKRH DEFDLAILEK AWNQLIARHD MLRMVVDADG
1981 QQRVLATTPE YHIQRDDLRA LSPEEQRIAL EKRRHELSYR VLPADQWPLF ELVVSEIDDC
2041 HYRLHMNLDL LQFDVQSFKV MMDDLAQVWR GETLAPLAIT FRDYVMAEQA RRQTSAWHDA
2101 WDYWQEKLPQ LPLAPELPVV ETPPETPHFT TFKSTIGKTE WQAVKQRWQQ QGVTPSAALL
2161 TLFAATLERW SRTTAFTLNL TFFNRQPIHP QINQLIGDFT SVTLVDFNFS TPVTLQEQMQ
2221 QTQQRLWQNM AHSEMNGVEV IRELGRLRGS QRQPLMPVVF TSMLGMTLEG MTIDQAMSHL
2281 FGEPCYVFTQ TPQVWLDHQV MESDGELMFS WYCMDNVLEP GAAEAMFNDY CAILQAVIAA
2341 PESLKTLASG IAGHIPRRRW PLNAQTDYDL RDIEQATLEY PGIRQTRAEM TEQGALTLDI
2401 VMADDPSPSA ATPDEHELTQ LALPLPEQAQ LDELEATWRW LEARALQGIA ATLNRHGLFT
2461 TPEIAHRFSA IVQALSAQAS HQRLLRQWLQ CLTERAWLIR EGESWRCRVP LSEIPEPQEA
2521 CPPSQWSQAL AQYLETCIAR HDALFSGQCS PLELLFNEQH RVTDALYRDN PASACLNRYT
2581 AQIAALCSAE RILEVGAGTA ATTAPVLKAT RNTRQSYHFT DVSAQFLNDA RARFHDESRV
2641 SYALFDINQP LDFTAHPEAG YDLIVAVNVL HDASHVVQTL RRLKLLLKAG GRLLIVEATE
2701 RNSVFQLASV GFIEGLSGYR DFRRRDEKPM LTRSAWQEVL VQAGFANELA WPAQESSPLR
2761 QHLLVARSPG VNRPDKKAVS HYLQQRFGTG LPILQIRQRE ALFTPLHAPS DAPTEPAKPT
2821 PVAGGNPALE KQVAELWQSL LSRPVARHHD FFELGGDSLM ATRMVAQLNR RGIARANLQD
2881 LFSHSTLSDF CAHLQAATSG EDNPIPLCQG DGDETLFVFH ASDGDISAWL PLASALNRRV
2941 FGLQAKSPQR FATLDQMIDE YVGCIRRQQP HGPYVLAGWS YGAFLAAGTA QRLYAKGEQV
3001 RIALIDPVCR QDFCCENRAA LLRLLAEGQT PLALPEHFDQ QTPDSQLADF ISLAKTAGMV
3061 SQNLTLQAAE TWLDNIAHLL RLLTEHTPGE SVPVPCLMVY AAGRPARWTP AETEWQGWIN
3121 NADDAVIEAS HWQIMMEAPH VQACAQHITR WLCATSTQPE NTL
//