LOCUS ABV12217.1 826 aa PRT BCT 31-JAN-2014
DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION CP000822-1038
PROTEIN_ID ABV12217.1
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Citrobacter koseri ATCC BAA-895"
/mol_type="genomic DNA"
/strain="ATCC BAA-895"
/db_xref="ATCC:BAA-895"
/db_xref="taxon:290338"
protein /locus_tag="CKO_01074"
/inference="protein motif:HMMPfam:IPR000015"
/inference="protein motif:ScanRegExp:IPR000015"
/note="COG: COG3188 P pilus assembly protein, porin PapC;
Psort location: OuterMembrane, score:10.00"
/transl_table=11
/db_xref="InterPro:IPR000015"
BEGIN
1 MLLVSSCVAN AREYRFSPSA LEGNMLTQQD IDLSLFSKSS AQLPGVYASR VMINDVRLDD
61 ADITYLGTPG GELTPQLTPD MLRKWGVAVD KYPELAALNA AKPLPEPLSA YIPQALATLD
121 FSVMTLRLSI PQAAIAGTGK GYIDPSRWDD GVPVAFVDYA FSGSQNQDDT QNNTTNQYLN
181 MRSGTNIGGW RLRNYATWSD TDGSHHWETI NTYLQHDIDA LKAQFTGGES NTRGDVFDSL
241 QYRGVNIASD EEMLPYSQRG YAPVIRGIAS SNAEVSVRQN GYLIYQQNVA PGAFEINDLY
301 STTNSGDLEV TVKEADGTER HFTQPYSSVA VMQRPGHMKY EVTAGRYRAD SGSEQNEPDF
361 VQGSLIYGLN NSVTLFGGVT AAQDYQAMNS GAGLSLGIVG SLSADVTLAK TRLDDDTQHT
421 GQSYRLLYSG KIDTTETNFT LASYRYSTRG YYSFADANQK YDDHEDDLLF RFNKRNRIQA
481 SISQNVSGAS LYLNGYQQDY WGTAYKERSI SAGLNTTIKN ISIHLAYTYS KSNGEESDQM
541 IAFGFSVPLS QWLPGAWSSY NISNNKHGYT QQNIGLNGTL LDDERLNYAF QQSHSNHDGA
601 DTSSVYGSYR SQYANLNAGY YTSSDDTQRL SYGVSGAIVA HPHGVTLAQP LGSQFAIVNA
661 NGASGVRFQN QRGIQTDWQG NAIIPSLSPY QENRIRVDTS SLPEDVDTSE TAVTVIPSRN
721 AAVSAAFDAH VGYRTLIKLT RPNGMTVPFG AMATVDALAI SGIVDDTGTL YLAGVADDVQ
781 LSVKWGNSQV QQCTAHITLN REHHAVSPTG IHYLSAICQQ EPQNVK
//