LOCUS ABV12023.1 1455 aa PRT BCT 31-JAN-2014
DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION CP000822-844
PROTEIN_ID ABV12023.1
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Citrobacter koseri ATCC BAA-895"
/mol_type="genomic DNA"
/strain="ATCC BAA-895"
/db_xref="ATCC:BAA-895"
/db_xref="taxon:290338"
protein /locus_tag="CKO_00873"
/inference="protein motif:Gene3D:IPR009081"
/inference="protein motif:HMMPfam:IPR000873"
/inference="protein motif:HMMPfam:IPR001242"
/inference="protein motif:HMMPfam:IPR006163"
/inference="protein motif:HMMTigr:IPR010071"
/inference="protein motif:ScanRegExp:IPR000873"
/inference="protein motif:superfamily:IPR009081"
/note="KEGG: eci:UTI89_C2210 0. putative peptide
synthetase K03367; COG: COG1020 Non-ribosomal peptide
synthetase modules and related proteins; Psort location:
Cytoplasmic, score:9.97"
/transl_table=11
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR001242"
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR009081"
/db_xref="InterPro:IPR010071"
BEGIN
1 MMSGNPLSWP QEQCHIIDQL YPYSAVNIIG GVVTIEGIVD LPRLHAAIQS AIRQFDALRM
61 WFVMGEESEV VSQVQPYHWR DIRHLTFSPD YDKENLRPAA IETFVDEWFR QPFTLLAHDL
121 FEFVTFTCGE QYSGYLFKAH HGIADGWSMA LLSNHVKRAY EQQDVPDDAS PAYSAFLAQQ
181 QSYQASTRFA VDRGWWRDYI DEYRDCFPDS SPIVTTEGIS CSTWLEPAMI NRLYRLCNRY
241 GCTLNTLFIA LFALYRARVW GEEKGVIGVP LANRHTREAR RCFGMFTNQL PLAYRLVRTE
301 RFCERVAFFQ RELKRGFKHS KYPITLFNQD LAEQGGGKLR AFDYCVNYYN FTYERHIAGA
361 AQRVESYYSG EQSYKLQIVL QTVNNHKESL RLSLEALRSA FTPHQLTAMK NGLLDLVTAL
421 DRQPDARLGD LEVYPAPHVA LACGSLKPSF TSRFAAQVVE HGDRTALIDN EQSLTYRQLD
481 DAVERVARYL RQQGIGRGQV VGIIAEHSAQ TVMVIYGILR CGAAFLPLNP ALPTTRLYAM
541 CRKAQVAHIL YDPAMHELTQ ALAFPASSLL QALATSALAR EPWPAIEPQD LAYVLFTSGS
601 TGEPKGVQVS HGNLANYLHF AAERYFTAQD RAALYSSLSF DLTITTLFAP LCVGASISVC
661 RHAESETLLR MAVVDQPNTV IKLTPAHLRL LCAAGISSEQ IRTLVVGGED FKRDLARKAA
721 ALFPQAVIYN EYGPTEATVG CMIYRYTGQE TLPSLPIGMA IDGCQVAICS PWGCPVPEGE
781 TGELVIYGAS VTQGYIDAPQ QTAAAYLKDT NGVMIGYRSG DIGYAIAPNT LVYQGRKDDQ
841 VKINGYRIEL CEIEQALLSA PQVESAAVAV IDDVQGQHSG LLACVTPSSV DVATVMQHLR
901 QQLPTYMQPK QCCAIAQLPL SHNGKVDVRQ MVATVRNTAP ASGSERLGDA AIRHSVRVCV
961 EGALEQTEFD DNENLYVLGL DSIKSIQIAA QLRHHGWTMS AVQVMECGTV NAICEFLASH
1021 TTVSQLAQYA HNTRIDLPAL RWFTQLALPV PNVYNHVIVL KVLPGCPLEQ LHNRLHTLIQ
1081 QQPALHSALD AEGRLLVCDP NVCYPNEVLT EYSTAQWTLA EVIAQCNSML DVTNGRVFTA
1141 ALLHAPQPAS STLVLCAHHL CVDMHSWYLI LSTLDAVSTV NGTSNSGLHR WNDYLASKTV
1201 DSATHESWRT VCQTLPLHFP PVSLPDDSLP RTRAWREDFR HPCVRRLFES SGNTAYSAET
1261 YVLTALALVL RYYSEEPWCR IEMEGMGRGC WPDEPDVADT VGWFTLFYPW AIPLHGDMAT
1321 LLSAIASDLA KRTHGGGDYG LLQMRHAPED SLAQGIRMNY IGVQAQPSLR YFHIDHFNSD
1381 IYTAPENALG CVLEFNIARS AADGLSFHCR FDPTRIALND VQLLLARYKN SLTDLDAWLC
1441 QHSATLTGAP TLWTL
//