LOCUS       ABV11545.1               671 aa    PRT              BCT 31-JAN-2014
DEFINITION  Citrobacter koseri ATCC BAA-895 hypothetical protein protein.
ACCESSION   CP000822-366
PROTEIN_ID  ABV11545.1
SOURCE      Citrobacter koseri ATCC BAA-895
  ORGANISM  Citrobacter koseri ATCC BAA-895
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Citrobacter.
REFERENCE   1  (bases 1 to 4720462)
  AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
            Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K.,
            Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
  CONSRTM   The Citrobacter koseri Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
            Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT     Citrobacter (diversus) koseri--Citrobacter cells are isolated from
            water, sewage, soils, and food, as well as from the feces of man
            and other animals, where they may be normal inhabitants. They can
            be found in urine, sputum, and other clinical specimens. They can
            sometimes be opportunistic pathogens particularly in
            immunocompromised patients in hospitals or in infants (Pepperell et
            al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
            references therein).
            
            The strain of Citrobacter koseri being sequenced, strain CDC
            4225-83, was isolated in 1983 in Maryland, where it caused neonatal
            meningitis. It was provided by Caroline Mohr and Melissa Campbell
            of CDC. The strain is available from the American Type Culture
            Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
            Centre as SGSC4696. The genome was sequenced to 8X coverage, using
            plasmid and fosmid libraries and was finished to an error rate of
            less than 1 per 10,000 bases. Automated annotation was performed
            and manual annotation will continue in the labs of Michael
            McClelland and Kenneth Sanderson. The National Institute of Allergy
            and Infectious Diseases (NIAID), National Institutes of Health
            (NIH) has funded this project.
            
            Coding sequences below are predicted using GeneMark v3.3 and
            Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
            Glimmer2 were blasted against NCBI's non-redundant (NR) database
            and predictions generated based on protein alignments. RNA genes
            were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
            was finished as follows unless otherwise noted: all regions were
            double stranded, sequenced with an alternate chemistries or covered
            by high quality data (i.e., phred quality >=30); an attempt was
            made to resolve all sequencing problems, such as compressions and
            repeats; all regions were covered by sequence from more than one
            m13 subclone.
FEATURES             Qualifiers
     source          /organism="Citrobacter koseri ATCC BAA-895"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-895"
                     /db_xref="ATCC:BAA-895"
                     /db_xref="taxon:290338"
     protein         /locus_tag="CKO_00382"
                     /inference="protein motif:BlastProDom:IPR004150"
                     /inference="protein motif:Gene3D:IPR004150"
                     /inference="protein motif:HMMPfam:IPR000445"
                     /inference="protein motif:HMMPfam:IPR001357"
                     /inference="protein motif:HMMPfam:IPR004149"
                     /inference="protein motif:HMMPfam:IPR004150"
                     /inference="protein motif:HMMPfam:IPR013839"
                     /inference="protein motif:HMMSmart:IPR001357"
                     /inference="protein motif:HMMSmart:IPR013840"
                     /inference="protein motif:HMMTigr:IPR001679"
                     /inference="protein motif:ScanRegExp:IPR001679"
                     /inference="protein motif:superfamily:IPR008994"
                     /inference="protein motif:superfamily:IPR010994"
                     /note="KEGG: stt:t0431 0. ligA; DNA ligase K01972; COG:
                     COG0272 NAD-dependent DNA ligase (contains BRCT domain
                     type II); Psort location: Cytoplasmic, score:8.96"
                     /transl_table=11
                     /db_xref="InterPro:IPR000445"
                     /db_xref="InterPro:IPR001357"
                     /db_xref="InterPro:IPR001679"
                     /db_xref="InterPro:IPR004149"
                     /db_xref="InterPro:IPR004150"
                     /db_xref="InterPro:IPR008994"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR013839"
                     /db_xref="InterPro:IPR013840"
BEGIN
        1 MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELEAQHP DLITPDSPSQ
       61 RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSGDKLTW CCELKLDGLA
      121 VSILYENGVL ISAATRGDGT TGEDITSNVR TIRAIPLKLR GDNIPARLEV RGEVFLPQAG
      181 FEKINEEARR TGNKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGIL EGGELPDTHL
      241 GRLLQFKAWG LPVSDRVTLC DSPEAVLDFY HKVEEDRPTL GFDIDGVVIK VNSMALQEQL
      301 GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN
      361 ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEETR PVEFPTHCPV CGSDVERVEG
      421 EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFRLTAG
      481 KLTGLDRMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA
      541 ASIDELQKVP DVGIVVATHV FNFFAEESNR DVIGQLLAEG IHWPAPIVVN ADEIDSPFAG
      601 KTIVLTGSLS LMSRDDAKAR LVALGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIDVI
      661 DEAEMLRLLG V
//