LOCUS ABV11495.1 759 aa PRT BCT 31-JAN-2014 DEFINITION Citrobacter koseri ATCC BAA-895 hypothetical protein protein. ACCESSION CP000822-316 PROTEIN_ID ABV11495.1 SOURCE Citrobacter koseri ATCC BAA-895 ORGANISM Citrobacter koseri ATCC BAA-895 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 4720462) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Latreille,P., Courtney,L., Wang,C., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Citrobacter koseri Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Citrobacter (diversus) koseri--Citrobacter cells are isolated from water, sewage, soils, and food, as well as from the feces of man and other animals, where they may be normal inhabitants. They can be found in urine, sputum, and other clinical specimens. They can sometimes be opportunistic pathogens particularly in immunocompromised patients in hospitals or in infants (Pepperell et al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and references therein). The strain of Citrobacter koseri being sequenced, strain CDC 4225-83, was isolated in 1983 in Maryland, where it caused neonatal meningitis. It was provided by Caroline Mohr and Melissa Campbell of CDC. The strain is available from the American Type Culture Collection as ATCC BAA-895 or from the Salmonella Genetic Stock Centre as SGSC4696. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >=30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Citrobacter koseri ATCC BAA-895" /mol_type="genomic DNA" /strain="ATCC BAA-895" /db_xref="ATCC:BAA-895" /db_xref="taxon:290338" protein /locus_tag="CKO_00332" /inference="protein motif:HMMPfam:IPR002505" /inference="protein motif:HMMPfam:IPR012301" /inference="protein motif:HMMPfam:IPR012302" /inference="protein motif:HMMPIR:IPR012188" /inference="protein motif:ScanRegExp:IPR001891" /note="KEGG: sty:STY2709 0. maeB; NADP-dependent malate dehydrogenase (decarboxylating) K00029; COG: COG0280 Phosphotransacetylase" /transl_table=11 /db_xref="InterPro:IPR001891" /db_xref="InterPro:IPR002505" /db_xref="InterPro:IPR012188" /db_xref="InterPro:IPR012301" /db_xref="InterPro:IPR012302" BEGIN 1 MDDQLKQSAL DFHEFPVPGK IQVSPTKPLA TQRDLALAYS PGVAAPCLEI EKDPLAAYKY 61 TARGNLVAVV SNGTAVLGLG NIGALAGKPV MEGKGVLFKK FAGIDVFDIE VDEHNPDKFI 121 DVVAALEPTF GGINLEDIKA PECFYIEQKL RERMNIPVFH DDQHGTAIIS TAAILNGLRV 181 VEKNISDVRM VVSGAGAAAI ACMNLLVALG MQKHNIVVCD SKGVIYKDRE PNMVETKAAY 241 AVVDDGKRTL DDVIDGADIF LGCSGPKVLT QEMVKKMARA PMILALANPE PEILPPLAKE 301 VRSDAIICTG RSDYPNQVNN VLCFPFIFRG ALDVGATAIN EEMKLAAVHA IAELAHAEQS 361 EVVASAYGDQ DLSFGPEYII PKPFDPRLIV KIAPAVAKAA MDSGVATRPI ADFDAYIDKL 421 TEFVYKTNLF MKPIFSLARK APKRVVLAEG EEARVLHATQ ELITLGLAKP ILIGRPSVIE 481 MRIQKLGLQI KSGVDFEIVN NESDPRFKEY WGEYYKIMKR RGVTQEQAQR AVISNTTVIG 541 AIMVLRGEAD AMICGTIGEY HEHFSVVQEL FGYREGVHAA GAMNALLLPS GNTFIADTYV 601 NDDPTPEQLA EITLMAAETV RRFGIEPKVA LLSHSNFGSS KSVAACKMRQ TLELVRERAP 661 ELMIDGEMHG DAALVESIRN DRMPDSPLKG AANILIMPNV EAARISYNLL RVSSSEGVTV 721 GPVLMGVAKP VHVLTPIASV RRIVNMVALA VVEAQTQPL //