LOCUS ABU78954.1 1860 aa PRT BCT 31-JAN-2014
DEFINITION Cronobacter sakazakii ATCC BAA-894 hypothetical protein protein.
ACCESSION CP000783-3645
PROTEIN_ID ABU78954.1
SOURCE Cronobacter sakazakii ATCC BAA-894
ORGANISM Cronobacter sakazakii ATCC BAA-894
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Cronobacter.
REFERENCE 1 (bases 1 to 4368373)
AUTHORS Kucerova,E., Clifton,S.W., Xia,X.Q., Long,F., Porwollik,S.,
Fulton,L., Fronick,C., Minx,P., Kyung,K., Warren,W., Fulton,R.,
Feng,D., Wollam,A., Shah,N., Bhonagiri,V., Nash,W.E.,
Hallsworth-Pepin,K., Wilson,R.K., McClelland,M. and Forsythe,S.J.
TITLE Genome sequence of Cronobacter sakazakii BAA-894 and comparative
genomic hybridization analysis with other Cronobacter species
JOURNAL PLoS ONE 5 (3), E9556 (2010)
PUBMED 20221447
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4368373)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,B., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT C. sakazakii--Cronobacter sakazakii is rarely encountered in
clinical specimens, and is more prevalent in the environment and in
food. However, Enterobacter sakazakii is strongly implicated in
food borne diseases causing severe meningitis or enteritis,
especially in neonates and infants (Nazarowec-White and Farber, Int
J FoodMicrobiol. 1997 Feb;34(2):103-13).
The strain of Enterobacter sakazakii being sequenced was isolated
from powdered milk formula fed to a hospitalized neonate that
developed an infection (Centers for Disease Control and
Prevention). It is available from the American Type Culture
Collection as ATCC BAA-894 or from the Salmonella Genetic Stock
Centre as SGSC4695. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries, and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regionswere covered by sequence from more than one m13
subclone.
FEATURES Qualifiers
source /organism="Cronobacter sakazakii ATCC BAA-894"
/mol_type="genomic DNA"
/strain="ATCC BAA-894"
/culture_collection="ATCC:BAA-894"
/db_xref="taxon:290339"
protein /locus_tag="ESA_03758"
/inference="similar to AA sequence:REFSEQ:YP_049205.1"
/note="KEGG: ava:Ava_4160 4.1e-34 VCBS K01317; COG:
COG5295 Autotransporter adhesin"
/transl_table=11
BEGIN
1 MATILDGSAT AQALTIQTLA RHGGELITTV QAQGTRTLIL SEPSVVRIQA TPDAALHYER
61 QGDDLILHMQ NGSTVVCKNY FAEQDGYHSE LLFDDGKHPP VHAVFPSNET MAASAPGLTP
121 EYQTVDSIEP LLIGDSHTMA ILGPILGAVA LGGVIAAAGS GGGGGDNDRG GDNGGNSGSN
181 GTIKLNTLSG DGMLNAQEAQ NALVVSGQTV NVAPGTTVTV TINGKTYTTT VAADNTWSLT
241 VPAADVQAFP DGPLPVRVTT TDTAGHTISA ESSLDVAAQF LPDPQIAPVF GDDMLVLTES
301 QGNQTISGTT GITGAGQSAV VVINGVSYPV EVDGQGNWSL TLTPAQLSTL PQGELPISVI
361 VTDAAGNTGS NTIIATVDTI PPPVTVLPLT GDNLVNAIES KLPIAINGTS EPGAQITVSY
421 NNQQYTTTTG ADGKWSVQIP ANALDGMANG NYPLTVTAKD AAGNTGTTSE TVTMALTPPA
481 PTLNTPFGDD LLNNNDTKVT QLLTGKTGAF GGSQGVIVNI GGLDVLSHAT PVRGSDGKWS
541 LNVDPVAGGN NYLATVDENG NWQLALPPDV LQQFADGEIT ITVVAVDGAG NFGAAPQQSF
601 DVDTTPPTLA VTPVTGDDII TALESGADVV VSGTSSGLES GQSVSVLING VTYVTAAGAD
661 GSWSVTIPAA NVQALPQGDV PISVSASDAA GNRGVAGSTV TVDTEVALTV NPVAGDDIIN
721 SLEIAGDVPV SGTASVEDAG RTVTVTLNGQ DYTTTVQPDG SWTVNLPAAD LQALADGQQP
781 LTVSLSDAVG NSVTINHPVT IDASAATLPV LSINPLSGDG YLNAFEHTRP LLLSGTSTNV
841 EAGQTVTLTL NGKTYTATTQ SDGSWSVEVP ATDVLLLTDQ QWTVNASVTD TSGNPASASG
901 DLTVVAQTNP TISVDPIATD NIINATEKGI DLTITGDSTA IEAGQPVTVL FNGVTYNAQV
961 GSDGSWSVTV PATALSGLND GPLSVVVGSQ DIAGNQVSAG QTVTVDSSVT LTIDTIAVDD
1021 IISDAESQSD VTISGTASTA DAGRTVTVTL GGNTYNATVQ PDGTWSVDVP AADVQAQSDG
1081 ELTVTASLTD AAGNAVSVDH LVTLDTTAPV VTINPIATDD IVSAAEAGGL VTLSGTAEAN
1141 STVVITIGTL TFNATTNASG VWTTDVSLAA LADGDYTANV VATDAAGNSG TTNRPFEMLV
1201 TPPAPTVEAL PFGNAFLSQV ESQTDQIVTG TTGTAHAANV EVVINGITYT ATFDASGTWQ
1261 ITVPAADLQA MPADGSQIPI TVTVTDTAGN SGNGNNSFSA DFVPPSLTVN DVTGDNLINP
1321 TEAAGVIAVS GTSDPGSVVT FTLNGETYGP VTTAGNGNWS INIPAGQLAS LVDDVYDMVV
1381 TAEDDAGNTV TETVPLTIDF TAPVITINEP LAADGYINQA EAQSGVTITG TGEADLPLTL
1441 TLNGVTYNTT VLANGTWSVQ LPASALGSVP NGDYTLSATQ TDAAGNSGSD TAPVSVLRTL
1501 PAPTITLAYG DGFLSQAESQ TDQTITGTTG LNSSALVESA TVTIGGIAYT PTINSNGTWS
1561 VTLTPTQLQA LPQGAVPIRV DVTDVAGNAG SRQTFSTVDT VIPTVDVLPV TGDDIIDQTE
1621 IAGGGLLISG DSEPGAEVTV LFGSVTLTTT VLGDGSWSVA ISPDALAQPE GSYTLDITSR
1681 DDAGNQVSTQ HTVQLQNGVA PPALMALFAE PLLISDVALT GTDGNDHFIL NSLDFSRIDG
1741 GAGVDTLTLG DKLQTLNLAQ LGFKVTHIDV LDLGTSGNGS LTLNLDNALN LKDDPHEPLR
1801 ITGDNGGEVT LLNTPEGIWS VSGVETIGDH VFDVYHNSAL GSTNTLGDLL IQENVHVKLM
//