LOCUS ABU78893.1 1407 aa PRT BCT 31-JAN-2014 DEFINITION Cronobacter sakazakii ATCC BAA-894 hypothetical protein protein. ACCESSION CP000783-3584 PROTEIN_ID ABU78893.1 SOURCE Cronobacter sakazakii ATCC BAA-894 ORGANISM Cronobacter sakazakii ATCC BAA-894 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter. REFERENCE 1 (bases 1 to 4368373) AUTHORS Kucerova,E., Clifton,S.W., Xia,X.Q., Long,F., Porwollik,S., Fulton,L., Fronick,C., Minx,P., Kyung,K., Warren,W., Fulton,R., Feng,D., Wollam,A., Shah,N., Bhonagiri,V., Nash,W.E., Hallsworth-Pepin,K., Wilson,R.K., McClelland,M. and Forsythe,S.J. TITLE Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species JOURNAL PLoS ONE 5 (3), E9556 (2010) PUBMED 20221447 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4368373) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,B., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. TITLE Direct Submission JOURNAL Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT C. sakazakii--Cronobacter sakazakii is rarely encountered in clinical specimens, and is more prevalent in the environment and in food. However, Enterobacter sakazakii is strongly implicated in food borne diseases causing severe meningitis or enteritis, especially in neonates and infants (Nazarowec-White and Farber, Int J FoodMicrobiol. 1997 Feb;34(2):103-13). The strain of Enterobacter sakazakii being sequenced was isolated from powdered milk formula fed to a hospitalized neonate that developed an infection (Centers for Disease Control and Prevention). It is available from the American Type Culture Collection as ATCC BAA-894 or from the Salmonella Genetic Stock Centre as SGSC4695. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries, and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regionswere covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Cronobacter sakazakii ATCC BAA-894" /mol_type="genomic DNA" /strain="ATCC BAA-894" /culture_collection="ATCC:BAA-894" /db_xref="taxon:290339" protein /locus_tag="ESA_03689" /inference="protein motif:Gene3D:IPR000722" /inference="protein motif:HMMPfam:IPR000722" /inference="protein motif:HMMPfam:IPR007066" /inference="protein motif:HMMPfam:IPR007080" /inference="protein motif:HMMPfam:IPR007081" /inference="protein motif:HMMPfam:IPR007083" /inference="protein motif:HMMSmart:IPR006592" /inference="protein motif:HMMTigr:IPR012754" /note="KEGG: eco:b3988 0. rpoC, tabD, groE, tabB; RNA polymerase, beta prime subunit K03046; COG: COG0086 DNA-directed RNA polymerase, beta subunit/160 kD subunit; Psort location: Cytoplasmic, score:9.97" /transl_table=11 /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" BEGIN 1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR 61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL 121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERSQIL TEEQYLDALE EFGDEFDAKM 181 GAEAIQALLK SMDLEAECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT 241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY 361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP 421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA 481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDKINA KGEGMVLTGP KEAERLYRSG 541 QAELHARVKV RITEYEKDAN GEFVAKTSLI DTTVGRAILW MIVPKGLPFS IVNQPLGKKA 601 ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPAKK AEIIAEAEAE 661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRN GEEEQQVSFN 721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR 781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTLEGI TMTPVIEGGD VKEPLRDRVL 841 GRVTAEDVLK PGTADILVAR NTLLNEQWCD ILEANSVDSV KVRSVVTCDT DFGVCAHCYG 901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIRL 961 SNAKSVVNSS GKLVVTSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW 1021 DPHTMPVITE VAGYIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI 1081 VDANGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR 1141 VADLFEARRP KEPAILAEVA GIVSFGKETK GKRRLVITPV DGGDAYEEMI PKWRQLNVFE 1201 GERVERGDVI SDGPEAPHDI LRLRGVQAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM 1261 LRKATIMDAG SSEFLEGEQV EYSRVKIANR ELEANGKVSA TYMRDLLGIT KASLATESFI 1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGELPA 1381 APQVTAEDAS ASLAELLNAG LGGNDNE //