LOCUS ABU78038.1 1049 aa PRT BCT 31-JAN-2014 DEFINITION Cronobacter sakazakii ATCC BAA-894 hypothetical protein protein. ACCESSION CP000783-2729 PROTEIN_ID ABU78038.1 SOURCE Cronobacter sakazakii ATCC BAA-894 ORGANISM Cronobacter sakazakii ATCC BAA-894 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter. REFERENCE 1 (bases 1 to 4368373) AUTHORS Kucerova,E., Clifton,S.W., Xia,X.Q., Long,F., Porwollik,S., Fulton,L., Fronick,C., Minx,P., Kyung,K., Warren,W., Fulton,R., Feng,D., Wollam,A., Shah,N., Bhonagiri,V., Nash,W.E., Hallsworth-Pepin,K., Wilson,R.K., McClelland,M. and Forsythe,S.J. TITLE Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species JOURNAL PLoS ONE 5 (3), E9556 (2010) PUBMED 20221447 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4368373) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,B., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. TITLE Direct Submission JOURNAL Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT C. sakazakii--Cronobacter sakazakii is rarely encountered in clinical specimens, and is more prevalent in the environment and in food. However, Enterobacter sakazakii is strongly implicated in food borne diseases causing severe meningitis or enteritis, especially in neonates and infants (Nazarowec-White and Farber, Int J FoodMicrobiol. 1997 Feb;34(2):103-13). The strain of Enterobacter sakazakii being sequenced was isolated from powdered milk formula fed to a hospitalized neonate that developed an infection (Centers for Disease Control and Prevention). It is available from the American Type Culture Collection as ATCC BAA-894 or from the Salmonella Genetic Stock Centre as SGSC4695. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries, and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regionswere covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Cronobacter sakazakii ATCC BAA-894" /mol_type="genomic DNA" /strain="ATCC BAA-894" /culture_collection="ATCC:BAA-894" /db_xref="taxon:290339" protein /locus_tag="ESA_02808" /inference="protein motif:FPrintScan:IPR001036" /inference="protein motif:HMMPfam:IPR001036" /inference="protein motif:HMMTigr:IPR004764" /note="KEGG: eci:UTI89_C2351 1.1e-107 yegO; hypothetical protein YegO K07789; COG: COG0841 Cation/multidrug efflux pump; Psort location: CytoplasmicMembrane, score:10.00" /transl_table=11 /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004764" BEGIN 1 MAKFFIDRPI FAWVIAIIIM LAGGLSIMKL PVAQYPSIAP PAVTINATYP GADAKTVQDT 61 VTQVIEQNMN GIDGLMYMSS TSDSSGTVQI TLTFESGTDA DIAQVQVQNK LQLAMPLLPQ 121 EVQQQGVSVE KSSSSFLMVL GLINTDGSMK QEDIADYAGA NIKDPISRTT GVGDVQLFGS 181 QYAMRIWLDP NKLNNFQLTP VDVISAIKAQ NAQVAAGQLG GTPPVKGQQL NASIIAQTRL 241 TSADEFSKIL LKVNQDGSRV LLRDVAKVEL GGENYDIIAR YNGQPAAGLG IKLATGANAL 301 DTAEAVRKTI AGLEPFFPSG LKVVYPYDTT PFVKISIFEV VKTLVEAIVL VFLVMYLFLQ 361 NFRATLIPTI AVPVVLLGTF AILAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 421 AEEGLPPKEA TRKSMGQIQG ALVGIALVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMVL 481 SVIVALILTP ALCATMLKPV AKGDHGEGKK GFFGWFNRMF DKSTHHYTDS VGNILRSTGR 541 YLLLYLLIVV AMAFLFIRLP SSFLPDEDQG VFLTMAQLPA GATQERTQKV LDEVTDYYLT 601 QEKDNVNSVF TVNGFGFSGR GQNTGLAFVS LKNWDERPGA ENKVPAITGR AMGRFSQIKD 661 AMVFAFNLPA IVELGTATGF DFELIDQGNL GHDKLTQARN QLLGEAAQHP DLLSQVRPNG 721 LEDTPQFKID IDQEKAQALG VSISDINTTL ASAWGGSYVN DFIDRGRVKK VYVMSQAQYR 781 MLPGDINNWY VRGTNGQMVP FSAFSTSHWE YGSPRLERYN GLPSMQIQGQ AVQGKSTGEA 841 MAMMEQLASK LPTGIGYDWT GMSYQERLSG NQAPALYAIS LIVVFLCLAA LYESWSIPFS 901 VMLVVPLGVI GALLAASLRG LNNDVYFQVG LLTTIGLSAK NAILIVEFAK DLMEKEGKGL 961 IEATLEAVRM RLRPILMTSL AFILGVMPLV ISSGAGSGAQ NAVGTGVMGG MVTATILAIF 1021 FVPVFFVVVR RRFSRKSEDI EHSHPVEHH //