LOCUS ABU76308.1 1176 aa PRT BCT 31-JAN-2014
DEFINITION Cronobacter sakazakii ATCC BAA-894 hypothetical protein protein.
ACCESSION CP000783-999
PROTEIN_ID ABU76308.1
SOURCE Cronobacter sakazakii ATCC BAA-894
ORGANISM Cronobacter sakazakii ATCC BAA-894
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Cronobacter.
REFERENCE 1 (bases 1 to 4368373)
AUTHORS Kucerova,E., Clifton,S.W., Xia,X.Q., Long,F., Porwollik,S.,
Fulton,L., Fronick,C., Minx,P., Kyung,K., Warren,W., Fulton,R.,
Feng,D., Wollam,A., Shah,N., Bhonagiri,V., Nash,W.E.,
Hallsworth-Pepin,K., Wilson,R.K., McClelland,M. and Forsythe,S.J.
TITLE Genome sequence of Cronobacter sakazakii BAA-894 and comparative
genomic hybridization analysis with other Cronobacter species
JOURNAL PLoS ONE 5 (3), E9556 (2010)
PUBMED 20221447
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4368373)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,B., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT C. sakazakii--Cronobacter sakazakii is rarely encountered in
clinical specimens, and is more prevalent in the environment and in
food. However, Enterobacter sakazakii is strongly implicated in
food borne diseases causing severe meningitis or enteritis,
especially in neonates and infants (Nazarowec-White and Farber, Int
J FoodMicrobiol. 1997 Feb;34(2):103-13).
The strain of Enterobacter sakazakii being sequenced was isolated
from powdered milk formula fed to a hospitalized neonate that
developed an infection (Centers for Disease Control and
Prevention). It is available from the American Type Culture
Collection as ATCC BAA-894 or from the Salmonella Genetic Stock
Centre as SGSC4695. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries, and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regionswere covered by sequence from more than one m13
subclone.
FEATURES Qualifiers
source /organism="Cronobacter sakazakii ATCC BAA-894"
/mol_type="genomic DNA"
/strain="ATCC BAA-894"
/culture_collection="ATCC:BAA-894"
/db_xref="taxon:290339"
protein /locus_tag="ESA_01039"
/inference="protein motif:HMMPfam:IPR009302"
/inference="protein motif:HMMTigr:IPR006431"
/inference="protein motif:HMMTigr:IPR013491"
/inference="protein motif:ScanRegExp:IPR000223"
/inference="similar to AA sequence:REFSEQ:NP_288651.1"
/note="KEGG: eci:UTI89_C5128 1.3e-35 putative tail length
tape measure protein precursor K00924; COG: COG5281
Phage-related minor tail protein; Psort location:
OuterMembrane, score:9.49"
/transl_table=11
/db_xref="InterPro:IPR000223"
/db_xref="InterPro:IPR006431"
/db_xref="InterPro:IPR009302"
/db_xref="InterPro:IPR013491"
BEGIN
1 MATLRELIIK ISANSQSFQT EIARASRMGQ DYYRTMQNGG RQAAAAARES EQALSELTNG
61 FASAGRAAAA ATAAFATGKI VQIADEWTSV NARLKQASSS TDDFTNSQMQ LMQISQRTGT
121 AFTDNANLFA RAAASMREFG YNSEDVLRVT EAVSTGLKIS GASAEESGSV ITQFSQALAQ
181 GVLRGEEFNA VNESGDRVVR ALAAGMGVAR KDLKAMADQG QLTIDKVVPA MISQLDTLRG
241 EFGSMPQTVS GSMQKVTNSF MAWVGGVNQA TGATDALSGG LNGLAGALDG ITRSGVSGAL
301 DDVADNMSTI TTVAGGLIGV GLAKYLGGIV SSATGATTSL ISAAKAEVAL AVAQDKAAQS
361 SVAASRADVY RAQQALQAAR GADVQAAQQE KIAAAEAKVT AAQTRLNAAL AGGTATEKVR
421 ARAALERAQS GLAAAKNADV QTAAEKRLAA AQAALNRNLA GRVTTQNNLN SVTAVGTRLL
481 GGAMGLIGGV PGLVMLGAGA WYALYQNQEQ ARQSARDYAG TIEEIRNKTR EMSLPEATDN
541 ESKTREALKE QNRLISDQET KIRSIKDAIS GYQQMLANPG VTINGYMVNH LTSMDEATTE
601 LANSTDALAV EQERLSQMQA KSNEIQSVLE GLEHRRVDLI RQQAAEQNKV YQSLLIMNGE
661 HAEFNRLLGL GNNLLAARQG LANIPMRIPQ ADSTQQQKDA LEKSRRDLEL SRLKGEAKEI
721 ARLGYVADDL GLTTDPQYQN NRQALINIGL ETWRNNEANK PQKKGPKTEA EKTEDIYKRL
781 IKQQQEQIAL AGQSTELAKV KYQVSQGELA TLSQAQKAEV MRNASLIDQV KLREQLRAYE
841 ANLADSNASA RAANQADLIG FGQGSRFRQR AQEMLNIRKD FEQKNVELQR QYQGGDITED
901 LYQKELALNK QYLAERLRDQ QDFYVASDAQ RGDWVGGMRE GFADWADNAS DYASQSAELV
961 SSSMDSALDN VTAMLVGNKA SWKDWGLSVL QTISKVALQM AVVNAMGGGS SGSGLFGSLL
1021 GGIAGGIAGG AAGDTNAGTA IQNYGASFQF NAKGGVYSSA DLSSYSGSVV DTPTFFAFAK
1081 GAGVMGEAGP EAIMPLTRDA TGRLGVKALG SGTQGGAGVS LSIGTINFSG GTGGAQGNTN
1141 AAGAVANQLT GAIIDTINTQ LRKPGTPLWN ATQGKR
//