LOCUS ABU74393.1 1620 aa PRT BCT 25-AUG-2017 DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein. ACCESSION CP000790-1762 PROTEIN_ID ABU74393.1 SOURCE Vibrio campbellii ATCC BAA-1116 ORGANISM Vibrio campbellii ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 2204018) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. FEATURES Qualifiers source /organism="Vibrio campbellii ATCC BAA-1116" /mol_type="genomic DNA" /strain="ATCC BAA-1116; BB120" /db_xref="ATCC:BAA-1116" /db_xref="taxon:2902295" /chromosome="II" protein /locus_tag="VIBHAR_06502" /inference="protein motif:HMMSmart:IPR003593" /note="KEGG: cal:orf19.6148 6.1e-06 USO2; intracellular protein transport K01553; COG: NOG04015 non supervised orthologous group" /transl_table=11 /db_xref="InterPro:IPR003593" BEGIN 1 MSDMTQKAVS DAGAYDVLKT RLLQQGSQLK SLSQSFNQQR QETFGGQDFK LIGKVNVQTD 61 AKCIPIDMAQ VNQHLLFGYH VQVGMKATPS LDDVFGLYHL HENEGTFRVE PLPLESSFLS 121 DSRFTHELTE LFTYYRDAKL SQISRQESTL YIAFQIGMRP EDRKVFRFQI NAHSIEYIDS 181 LGQNALTSVP QHDFDWIPTT RDDHVLGDHP HVSIQDKLFV ECVGGDLTIK VEDNTKDGKG 241 IYREDVEDPH QSVADAHIDY AFVGDLIALR VKPNREKHAR YFLYNSVTQS VVRADALEGS 301 AKTLPEDHGV LYANGYVLSN GEDKQFAFDA DQLKFFQQIT SPNGEDILYI FFNAVEGYYI 361 AYTYNLIEKK FEAPMESYGY SLYPDGRWLV FQLSENEEAS TIHPMRIWDT PFSTPEHYAK 421 VNAQTQGSSP LFNLGNTELV RALSSVLSIC QLAQSEEVTQ AAYEVLIKQC RSTLDHYTWL 481 NHDYACGIGS AINELMGTTD KIIDEFAKVQ QLQKHASSSL DQQKLAVSEL IGKIKLTPKE 541 QANTLLSLLS EVKGQVGVTM SLRQQHYIDE VQVDRLLEEL QAQRESLNLH LLTLLQDKKV 601 YVPFKKQIQK IELQLEEVTK TAEIQKLNEE VETLRHELQI VTEEVTDIET EDPTQATRIL 661 DLTTEVTSLL NTVSAKLRAK SQSLQSEEAQ AEFSAQFKLL SQSVSSAMEQ ALTPDDCDTQ 721 LAKLVGQLDK LESRFADFDQ FLSEIYSKRD EIQSTLDNHK QQLIAGQQRR VQNLLQAANV 781 TMSSIEKRVE RFDDVAGLNS YFATDAMVLK LQQLSQTIRE LGDSVKADSV DSKLKSLQDQ 841 SLRALRDNQD IFEKGGTVLR LGKHRFSVNQ QPLDLSLVDQ SGELALHISG TDFYQAVEDK 901 AFLDLQTVSR LDVASESEEV YRAEYLAYLI LHQASINQDG QSLDKLYDAL RENKLNELVQ 961 RFAAPRYREG YVKGIHDHDA VNILRKVLPV YQQAGLLRYS QTARSKAILW LLEQDADQIG 1021 HYQQQAQNAK LLREHLNASQ AYQELQKQLV DSLNDDQYEA ADYLAQLLSG QDWQIEVSQD 1081 SLSLCEDYLQ FRRSLGWQPQ PLSFTESFSD HHQWLSAYTA KKQYGQAFVC EAATVAVVNT 1141 LSEKRLASVD FSLVCHVEGL LGEHTRISKG SLELVLDDFI QRNEHHRSSV VPNFEAYLSQ 1201 RAQLLSSAKE DFRLSEFKPR PLTSFVRNKL ISESYLPLIG DNFAKQMGTL GDKKRTDLMG 1261 MLLLISPPGY GKTTLIEYIA HKLGLVFMKI NGPSIGHQAT SLDPADAPDQ NAAREIEKIN 1321 LAFEMGNNVL LYLDDIQHTH PEFLQKFISL CDGTRRIEGT WKGKTKTYDM RGKKFAVVMA 1381 GNPYTESGEA FRIPDMLANR ADIYNLGDML SDQKSIFDLS FIENSLTSNN VLAPLATRDL 1441 NDLYRFVRMA EGESIALSEM SHSYSAIESG EIVTTLQKLI MAQQIVLKVN QQYIKSAATA 1501 DQYRVEPPFK LQGSYRNMNK LAEKISSVMT DQEMNTLLQD HYQGEAQTLA AGTEENLLKL 1561 AELRGDMTDE QQARWSEIKE GYQRQQMMGD SEDRAGQVVQ QLAMLNQHVA RFGRHDQEGS //