LOCUS ABU74101.1 1585 aa PRT BCT 25-AUG-2017 DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein. ACCESSION CP000790-1470 PROTEIN_ID ABU74101.1 SOURCE Vibrio campbellii ATCC BAA-1116 ORGANISM Vibrio campbellii ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 2204018) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. FEATURES Qualifiers source /organism="Vibrio campbellii ATCC BAA-1116" /mol_type="genomic DNA" /strain="ATCC BAA-1116; BB120" /db_xref="ATCC:BAA-1116" /db_xref="taxon:2902295" /chromosome="II" protein /locus_tag="VIBHAR_06209" /inference="similar to AA sequence:REFSEQ:ZP_01477250.1" /note="COG: NOG23215 non supervised orthologous group" /transl_table=11 BEGIN 1 MGFQFDQEVY LFGAYFERKE TDEGNFFPNW HQESDLTEKT ELDGKIRPIP QTPIMVNAIA 61 GMDSQLWGTT LEGKIVELGM GEPLSKSAAQ PLNGEKVDGE ETVTEDKENF MILHPGARKE 121 DIQKDIDYEL SFPPISWLSQ MIAPPDYKDG GASDVATLAE NIKHFATTID GVVDGKRQTG 181 VKFKLTKIKP SQLAAKYEEE TDGKLSEEQK AYNSWYDKQQ KKPYLQGFIV PRVHTCAVLF 241 TDPFYAGAEV TLVQPLKQIK PGESESAGET IIATQTVIQR KPRWDDRIEN NVLPSALLHL 301 DPIDAKDGFY LIRVAFREQE WLEFEKELYQ RLKLPESVIR ANVKKSKAFI GNTDEVQDVY 361 TYELHERLIF KETAGIGKMA CVCGDMITLE ETLIQQFPSQ LPEYSVYASK GVTYHNQSKP 421 GLASLSLSSA IMKTYDSLSS DFLSIEGAKV YGTFGDMAKT IGQALWENAE AGNLPDFIMS 481 GLSLKAAFAA CKDAQQTIDI SKTLVALPLS VKDYRKLILK KTVINIPYIK QAFKDNGQTK 541 IFRGLGRLSK DFLSGTNQAL PVIQLGLSAM ETKEQYDKHI DALEDADQAH GSLKAYAQQY 601 LSAIAYLRRS DEKERWETKA TEVQGFLGNE AKIYTDAMGV VVRINFKFNS AEFENEVKAL 661 NSNYEELCKK LRNLLVENPD YQIALIGHGG PISSQEKNLI VSQRRIDTIK DRILNGTQGD 721 ERIKLERRLV TQAKGKAELL PKEGGYHDHG DRSDTADIAI NRRVEVRLVI PDFSISLPPS 781 RTGTLALNRA HQYWEGFKIT AKEAQKEAFF SAIDVLATVA LWTPASPIAA YYLAGSTAGK 841 LLGAATDFYG DLFGDQTFKK LKDTYNTKSM LKTLSMINQE LIVLYEEVDT KLEQKELKPS 901 EIAGFLESQV NHDELLKRFL LRAYALNSLV ELLAILSSMD GVLRSFDNLI EQYEVDLFIE 961 QYVMSDNWSI PVNMGNTLAL NWINRKKAFN SSLSHTVSSL AFDQGRQVHG SFNTGFPVQS 1021 QLYLNDKTAD MIDINLAKKE GLKAFCNDFN LTKVELEEKD IGFSRLLVKE GNNWQPYVDW 1081 VREESGRKLR PQTRVMLQVI LTGEGEHHSK SMFLREVSYS TEVIGFNTNC PAFDVLFTKK 1141 NAQELQDPDG AVAKYFEQQP QLQEEELELH SLEFEPTYTF GHVYIHGLKP LCPYVKGIDS 1201 LKALIKGQSV FEHVLDNDGF DQMEYTFSLA KHDLALGVRM VGTNNQFRLE YLTAKYGTSK 1261 ASSPQKSHFD GQIEVLSQFE DTDFLIEDFV MSESSSARDN TPQVIGDQLT VLQGIEIDGQ 1321 LKWGEDWTEQ ALASEFDWNK ETSFAVCFAL FGDELASQEY ETMRLNWREL MMKLKLKDGP 1381 TIHSAMHYCG EMSIATHTTV VPSNNNYNGM QNEIVFKLAH DKTQSTHNHD DLAQSAIDFL 1441 QDNTAQYSQS LKSSDRKHVY IVRFKFTYVS PTGTLVDGMR PYGDIIAGKN LKPLTVTFES 1501 LQQSALNEGY PLPGIDVRLP PIKDYMDKPW TRILNEKEPS SISVRNHWGN LESPEQKREF 1561 VNKWITEQGL SLKAPQVELL QIKEI //