LOCUS ABU74012.1 985 aa PRT BCT 25-AUG-2017
DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION CP000790-1381
PROTEIN_ID ABU74012.1
SOURCE Vibrio campbellii ATCC BAA-1116
ORGANISM Vibrio campbellii ATCC BAA-1116
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 2204018)
AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
Tu,K.C., Irgon,J. and Wilson,R.K.
CONSRTM The Vibrio harveyi Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that
'glow in the dark,' just as the commonly known firefly. Based on
their 16S ribosomal RNA (rRNA) classification, they belong to the
group of bacteria known as Proteobacteria, which is further
sub-divided into five groups, including the gamma proteobacteria.
This group includes many families, one of which is the Vibrionaceae
(bioluminescent bacteria). One of the Vibrios is a human pathogen
and causes cholera. Vibrio harveyi can be found globally in marine
environments, either in a free-living state or in symbiosis with
marine life. The sequenced strain is BB120, ATCC BAA-1116
http://www.atcc.org/common/catalog/numSearch/numResults.cfm
Sequence/Assembly
The genome of Vibrio harveyi was sequenced to 8X coverage using a
combination of plasmid and fosmid end sequences. Additional 454
sequence reads bring the present coverage to 10.8X. Assembly was
performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
The genome has undergone automated sequence improvement
(pre-finishing) followed by manual finishing, and automated
annotation. The National Science Foundation (NSF) is providing
funding for the complete sequence of the Vibrio harveyi genome.
Annotation
Coding sequences were predicted using GeneMark v3.3 and Glimmer2
v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
blasted against NCBI's non-redundant (NR) database and predictions
generated based on protein alignments. RNA genes were determined
using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
the contig level and may not necessarily reflect any known order or
orientation between contigs.For questions regarding this assembly
or project, please visit the Vibrio harveyi genome page
(http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
choose the designated contact person.
FEATURES Qualifiers
source /organism="Vibrio campbellii ATCC BAA-1116"
/mol_type="genomic DNA"
/strain="ATCC BAA-1116; BB120"
/db_xref="ATCC:BAA-1116"
/db_xref="taxon:2902295"
/chromosome="II"
protein /locus_tag="VIBHAR_06119"
/inference="protein motif:BlastProDom:IPR001789"
/inference="protein motif:Gene3D:IPR003594"
/inference="protein motif:HMMPfam:IPR001789"
/inference="protein motif:HMMPfam:IPR003594"
/inference="protein motif:HMMPfam:IPR003660"
/inference="protein motif:HMMPfam:IPR003661"
/inference="protein motif:HMMPfam:IPR008207"
/inference="protein motif:HMMSmart:IPR001789"
/inference="protein motif:HMMSmart:IPR003594"
/inference="protein motif:HMMSmart:IPR003661"
/inference="protein motif:HMMSmart:IPR008207"
/inference="protein motif:superfamily:IPR003594"
/inference="protein motif:superfamily:IPR008207"
/inference="protein motif:superfamily:IPR009082"
/inference="protein motif:superfamily:IPR011006"
/note="KEGG: vpa:VPA0675 0. torS; sensor protein TorS
K07647; COG: COG0642 Signal transduction histidine kinase;
Psort location: CytoplasmicMembrane, score:9.97"
/transl_table=11
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR008207"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR011006"
BEGIN
1 MLLATASIGR KLLLSFIAMA MLVMLSALIG VSGFSLVAKT ERNVVDSAIP AMIEARQVSE
61 LSTRIISSVQ MLSNAQNEQE RKEAGRVLFD QLESLLTHIK ELGGESFDAQ LLEALENNVQ
121 NVINNLAELG VTVERKLWLT KEIDTRVEEM RLLSEELEQL TRTQVQNTST ITVANVTHIY
181 DLLESNKKAQ VYQALDALVE VDLDLTERLH ELHLLAFKML NQIEEARTLT NVDRIQQIQT
241 AFEDNLKIMK RRVLAVEDPT RSQQMSQLLT DLGKRQVVFT ILLQQYENNE QSQELMQKTL
301 ELFSELNGTV NKLVDDSNQT TRVAVDQLTS TLKFAQWSLT VISIIGLIIV VIILWRVVYV
361 SVVKRLAEYS SALLSVAQGN LAVELEVKGK DELAHMGQAI ITARNTAQAL KVVAEGEAKA
421 KRELEEHKEH LEELVEQRTS QLKQANRRLN EEVLNHAKAR KQAEQASRAK SAFLATMSHE
481 IRTPMNGVLG TARLLIDSGL NPMQKRYAEI INRSGKTLLA ILNDVLDYSK IEAGHLEIRS
541 LGFDLHQMVE DTFQLMNGKA QEKKLLFSYH IESDVGRYWK GDVTRINQVL SNLVGNAIKF
601 TEEGEIDIYV SLNPEDESQV LFEVSDTGIG IAKKDKKTLF DAFTQAEGGM NQTGGTGLGL
661 AISRRIIQAM GGCLDVDSEE GHGSRFWFSI PLEESEPVET VTIANARCKV RAKVLLVEDN
721 TVNRVVAEGF LESMGHEVTM AENGLEAEQI IDKHDFDIAL VDINLPDCNG ADLIHRLKRI
781 ERNKPADKAL APTPMVAVSA HVFAEEVESY LAAGFDGYLP KPMEKEALAA LIQDMLDGKQ
841 LLLPQECVLQ DETTTTTNNN EMLVTTDPIA EEPAMVIINP NVIQSDMKFL GREKMLHIID
901 LFRQTSADVL SQMEASAENG ESRAVKDLAH KLKGSAGSLG LTALMKTCQS IEVAAESLEA
961 YTEHHNALKT QVSESVIALD NLMTQ
//