LOCUS ABU72730.1 447 aa PRT BCT 25-AUG-2017
DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION CP000790-99
PROTEIN_ID ABU72730.1
SOURCE Vibrio campbellii ATCC BAA-1116
ORGANISM Vibrio campbellii ATCC BAA-1116
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 2204018)
AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
Tu,K.C., Irgon,J. and Wilson,R.K.
CONSRTM The Vibrio harveyi Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that
'glow in the dark,' just as the commonly known firefly. Based on
their 16S ribosomal RNA (rRNA) classification, they belong to the
group of bacteria known as Proteobacteria, which is further
sub-divided into five groups, including the gamma proteobacteria.
This group includes many families, one of which is the Vibrionaceae
(bioluminescent bacteria). One of the Vibrios is a human pathogen
and causes cholera. Vibrio harveyi can be found globally in marine
environments, either in a free-living state or in symbiosis with
marine life. The sequenced strain is BB120, ATCC BAA-1116
http://www.atcc.org/common/catalog/numSearch/numResults.cfm
Sequence/Assembly
The genome of Vibrio harveyi was sequenced to 8X coverage using a
combination of plasmid and fosmid end sequences. Additional 454
sequence reads bring the present coverage to 10.8X. Assembly was
performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
The genome has undergone automated sequence improvement
(pre-finishing) followed by manual finishing, and automated
annotation. The National Science Foundation (NSF) is providing
funding for the complete sequence of the Vibrio harveyi genome.
Annotation
Coding sequences were predicted using GeneMark v3.3 and Glimmer2
v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
blasted against NCBI's non-redundant (NR) database and predictions
generated based on protein alignments. RNA genes were determined
using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
the contig level and may not necessarily reflect any known order or
orientation between contigs.For questions regarding this assembly
or project, please visit the Vibrio harveyi genome page
(http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
choose the designated contact person.
FEATURES Qualifiers
source /organism="Vibrio campbellii ATCC BAA-1116"
/mol_type="genomic DNA"
/strain="ATCC BAA-1116; BB120"
/db_xref="ATCC:BAA-1116"
/db_xref="taxon:2902295"
/chromosome="II"
protein /locus_tag="VIBHAR_04821"
/inference="protein motif:BlastProDom:IPR003192"
/inference="protein motif:Gene3D:IPR003192"
/inference="protein motif:HMMPfam:IPR003192"
/inference="similar to AA sequence:SwissProt:P59494"
/note="COG: COG4580 Maltoporin (phage lambda and maltose
receptor); Psort location: OuterMembrane, score:9.93"
/transl_table=11
/db_xref="InterPro:IPR003192"
BEGIN
1 MELRMKKVSV IAAAVAATLA AGSAFAVDFH GYMRAGVGVS ADGGQQVTFE KQKIGRLGNE
61 GDIYGEIQLG QEVYNNNGKT FYVDSMIAVT SNGSNDWEGT ASNCGTTVSH PDGQDPSATT
121 KCVDDAEFAL RQFNVQAKGV LDFAPEATLW AGKRYYQRHD IHISDFYYWN ISGAGAGVEG
181 IEAGPGQLSF AWVRNDRNDN FKLGENNPGD TPDAGNDGGA ANVNTLDLRY AGLPVWENGS
241 LELGLNYALV NETDDASDAA KDAKDGVMFT AELTQGLDSG FNKTVFQYGT EGYSKTMAFY
301 GDGSWYGAEA NDGASGYRLI NWGVIGMGQN WEMGHQLVYG VGEDMWDGQD KLETMSVVVR
361 PMYKWDDNHK TIFEAGYAID DNDGAENKFG KLTVAQAWSA GSSFWARPEI RVYASYLTAD
421 KDDNSNAFDG GRSDDTFQFG VQAEAWW
//