LOCUS ABU72354.1 456 aa PRT BCT 25-AUG-2017
DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION CP000789-3293
PROTEIN_ID ABU72354.1
SOURCE Vibrio campbellii ATCC BAA-1116
ORGANISM Vibrio campbellii ATCC BAA-1116
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 3765351)
AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
Tu,K.C., Irgon,J. and Wilson,R.K.
CONSRTM The Vibrio harveyi Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that
'glow in the dark,' just as the commonly known firefly. Based on
their 16S ribosomal RNA (rRNA) classification, they belong to the
group of bacteria known as Proteobacteria, which is further
sub-divided into five groups, including the gamma proteobacteria.
This group includes many families, one of which is the Vibrionaceae
(bioluminescent bacteria). One of the Vibrios is a human pathogen
and causes cholera. Vibrio harveyi can be found globally in marine
environments, either in a free-living state or in symbiosis with
marine life. The sequenced strain is BB120, ATCC BAA-1116
http://www.atcc.org/common/catalog/numSearch/numResults.cfm
Sequence/Assembly
The genome of Vibrio harveyi was sequenced to 8X coverage using a
combination of plasmid and fosmid end sequences. Additional 454
sequence reads bring the present coverage to 10.8X. Assembly was
performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
The genome has undergone automated sequence improvement
(pre-finishing) followed by manual finishing, and automated
annotation. The National Science Foundation (NSF) is providing
funding for the complete sequence of the Vibrio harveyi genome.
Annotation
Coding sequences were predicted using GeneMark v3.3 and Glimmer2
v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
blasted against NCBI's non-redundant (NR) database and predictions
generated based on protein alignments. RNA genes were determined
using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
the contig level and may not necessarily reflect any known order or
orientation between contigs.For questions regarding this assembly
or project, please visit the Vibrio harveyi genome page
(http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
choose the designated contact person.
FEATURES Qualifiers
source /organism="Vibrio campbellii ATCC BAA-1116"
/mol_type="genomic DNA"
/strain="ATCC BAA-1116; BB120"
/db_xref="ATCC:BAA-1116"
/db_xref="taxon:2902295"
/chromosome="I"
protein /locus_tag="VIBHAR_03409"
/inference="protein motif:HMMPfam:IPR000667"
/inference="protein motif:HMMTigr:IPR000667"
/inference="protein motif:superfamily:IPR012338"
/inference="similar to AA sequence:REFSEQ:NP_798847.1"
/note="KEGG: vpa:VP2468 1.8e-203 D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259;
COG: COG2027 D-alanyl-D-alanine carboxypeptidase
(penicillin-binding protein 4)"
/transl_table=11
/db_xref="InterPro:IPR000667"
/db_xref="InterPro:IPR012338"
BEGIN
1 MAYPHQEVLP EGSRVSLIAE KLNDQSELTG IHPTDQYFPP ASTLKVVTAL AAKLELGNGF
61 AFRTTLESSN SDAVLTFSGD PTLLTQDLKT MLRRAKKNGL NQIKGDLWLD NSAFTGYNRA
121 VGWPWDILGV CYSAPASAIT LNDNCVQASI YTQKNGSTRV YVPEHQPINV KTSVQTVSRS
181 VQKSRHCDLD LIANPDNQYE LTGCLVDRGD KPLPLKFAVQ DTERYTSQKV QKLLKQVGIS
241 LKGNIRIGKA PEKQRKLLAV HKSKPLPQLL DQMLKRSDNL IADTLTKTLG AKFFVQPGSF
301 TNGTEAIKQI IFANTGVDIR NARLEDGSGL SRNNRISATS MAAILRYIWQ HEKELNLIAI
361 MPKSGESGTL QYRKSMLKAP IKGQLIAKSG SLYGTYNMAG YGLDKNGKPN TLFVQFVSDY
421 FPEKRDDNKP VVPPITQFEK LFYQDIVSFS QAMPKK
//