LOCUS ABU70544.1 876 aa PRT BCT 25-AUG-2017 DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein. ACCESSION CP000789-1483 PROTEIN_ID ABU70544.1 SOURCE Vibrio campbellii ATCC BAA-1116 ORGANISM Vibrio campbellii ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3765351) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. FEATURES Qualifiers source /organism="Vibrio campbellii ATCC BAA-1116" /mol_type="genomic DNA" /strain="ATCC BAA-1116; BB120" /db_xref="ATCC:BAA-1116" /db_xref="taxon:2902295" /chromosome="I" protein /locus_tag="VIBHAR_01574" /inference="protein motif:Gene3D:IPR013824" /inference="protein motif:HMMPanther:IPR000380" /inference="protein motif:HMMPfam:IPR006171" /inference="protein motif:HMMPfam:IPR013263" /inference="protein motif:HMMPfam:IPR013497" /inference="protein motif:HMMPfam:IPR013498" /inference="protein motif:HMMSmart:IPR003601" /inference="protein motif:HMMSmart:IPR003602" /inference="protein motif:HMMSmart:IPR006154" /inference="protein motif:HMMTigr:IPR005733" /inference="protein motif:ScanRegExp:IPR000380" /note="KEGG: vpa:VP1022 0. DNA topoisomerase I K03168; COG: COG0551 Zn-finger domain associated with topoisomerase type I; Psort location: Cytoplasmic, score:8.96" /transl_table=11 /db_xref="InterPro:IPR000380" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005733" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013263" /db_xref="InterPro:IPR013497" /db_xref="InterPro:IPR013498" /db_xref="InterPro:IPR013824" BEGIN 1 MGKSLVIVES PAKAKTINKY LGKDFIVKSS VGHVRDLPTA GQSTGEKKAA AISTKGMSPE 61 EKARVKKEKD RKALIKKMGI NPYHDWDANY QILPGKEKVV SELQKLAKDA DYVYLATDLD 121 REGEAIAWHL REIIGGDEER YKRVVFNEIT KNAIQQAFQT PGELNMDGVN AQQARRFMDR 181 VVGFMVSPLL WKKVARGLSA GRVQSVAVKL LVEREREINA FIPEEFWDIN ANTHTKDKTA 241 FKLLVAQKDG VAFKPVNEAE TKAALSVLEK ASYEVCKRED RPTKSKPSAP YITSTLQQAA 301 STRLGYGVKK TMMLAQRLYE AGYITYMRTD STNLSAEAVD AVRGFIGSEY GDKYLPAKPL 361 TYGSKEGAQE AHEAIRPSDV SVKSEDLQGV DADAHKLYSL IWNQFVACQM TPAEYDSTTI 421 SVKAAEYTLK AKGRILKFDG WTRVQRPMGK NEDTILPAVQ LGEKLDLESL EPKQHFTKPP 481 ARFTEAALVK ELEKRGIGRP STYASIISTI QDRGYVKVEQ RRFYAEKMGE IVTDRLDDSF 541 NDLMNYDFTA RMEQKLDQIA EGDVMWKDVL DNFFTDFTGD LEKAEQDENE GGMKLNHIVM 601 TDIECPTCGR PMGIRTASTG VFLGCSGYAL PPKERCKTTI NLGDEDGIIN VLEEDVETAA 661 LRAKKRCPIC ETAMDAYLID DKRKMHVCGN NPNCEGYIVE HGEFKVKGYD GPVVECDKCG 721 SDMVLKNGRF GKYMDCTSET CKNTRKILKN GEVAPPKEDP VHFPELPCEN SDAYFVLRDG 781 ASGLFMAASN FPKSRETRAP LVSELARFEE RLPEKFKYLT TAPAADPDGR PAVVRFSRKS 841 KENYVRTEDN GKPSGWTALF VDGKWEITDK RKKAKA //