LOCUS ABU69793.1 927 aa PRT BCT 25-AUG-2017 DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein. ACCESSION CP000789-732 PROTEIN_ID ABU69793.1 SOURCE Vibrio campbellii ATCC BAA-1116 ORGANISM Vibrio campbellii ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3765351) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. FEATURES Qualifiers source /organism="Vibrio campbellii ATCC BAA-1116" /mol_type="genomic DNA" /strain="ATCC BAA-1116; BB120" /db_xref="ATCC:BAA-1116" /db_xref="taxon:2902295" /chromosome="I" protein /locus_tag="VIBHAR_00792" /inference="protein motif:HMMPfam:IPR010656" /inference="protein motif:HMMTigr:IPR011853" /note="KEGG: mta:Moth_1349 0.0050 V-type H(+)-translocating pyrophosphatase K01507; COG: COG4666 TRAP-type uncharacterized transport system, fused permease components; Psort location: CytoplasmicMembrane, score:10.00" /transl_table=11 /db_xref="InterPro:IPR010656" /db_xref="InterPro:IPR011853" BEGIN 1 MQSADFFQKS RSHLKKETAH FLCPQINGLQ ICSDSLESKL RSIHYTVIAK RGSRYTIQTG 61 PSIIRKKYMA TNNTPSQDVQ EMVAQADTGA RSPMGLQGRI LWFVPLCWSL FQLWYASPLP 121 FIFNFGVLND TEARAIHLTF ATFLAFTAYP AMKNSPRDHI PLIDWALALA GSFAAAYIYI 181 FYTELAGRSG APTTVDIVVS VTGMALLLEA TRRALGPPLM VVAAVFLTYT FAGPYMPDVI 241 AHKGASLNKA MSHLWLTTEG VFGVALGVST SFVFLFVLFG AMLERAGAGA YFIKVAFSLL 301 GHMKGGPAKA AVVASGLSGL VSGSSIANVV TTGTFTIPLM KRVGFPGTKA GAVEVAASTN 361 GQLTPPIMGA AAFLMVEYVG ISYVEVIKAA LLPALISYIA LIYIVHLEAC KAGMTGLPRR 421 HNPTMLQSLL SFTGTILGLC VISALVYYGV GWTKDVFGDA ATTIVTIALL IAYVGLVKIS 481 ANHVKDGAIE IDAELTEVPD PGPTIKSGLH YLLPIVVLVW CLTVERFSPG LSAFWATVFM 541 IFILLTQRPL IALLSKQGDL VEQTKDGFVD LAESLVSGAR NMIGIGVATA AAGTVVGVVT 601 LTGIGLVMTD FVEFISGGSI ILMLLFTAVI SLILGMGLPT TANYIVVSTL MAPVIVTLGA 661 AHGLIIPLIA VHLFVFYFGI LADDTPPVGL AAFAAAAIAK SDPIRTGIQG FTYDIRTAIL 721 PFMFVFNTQL LLMGIDSWWH LALTVISSII AMLIFSAATQ GWWFTRNKWW ETILLLVLTF 781 SFFRPGFWWD MLYPAKVLSP GVEIAQITEG LNVGESIELR VAGENLEGDY VEKTVRLPFE 841 DKAVTAEERL SSMGLMLTEN DGKMIVDMVE FGSPAESSGI DFDWEIKWVV QDAERPMKEW 901 VFVPCLMILL VLALNQKRRA RKEQLSA //