LOCUS ABO50856.1 670 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 DNA ligase, NAD-dependent protein. ACCESSION CP000612-2304 PROTEIN_ID ABO50856.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_2346" /EC_number="6.5.1.2" /note="KEGG: chy:CHY_1100 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like" /transl_table=11 /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR001679" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR004149" /db_xref="InterPro:IPR004150" /db_xref="InterPro:IPR013839" /db_xref="InterPro:IPR013840" BEGIN 1 MADLSQQSKA RVEALRREIN HHNYQYYVLD QPTITDAQYD QLMQELLRLE ERHPELVTPD 61 SPTQRVGGQV QRGFSSVPHK IPMLSLGNAF GEGDLREFDR RVRSYLPGEE VKYVVELKID 121 GLAISLWYEK GLLVRGATRG DGELGEDITI NLKTIRAIPL RLTQEVPFLE VRGEAYMPKD 181 SFVRLNEARE EAGEPLFANP RNAAAGSLRQ LDPKITAARN LSVFMYAIGY IEGAKPPSHA 241 ESLAWLKELG IRINPDHQVC GSIDEVIDFI SQWQAKRYQL PYAIDGMVIK VNSLEQQQRL 301 GTTMKSPRWA IAYKFPAEQA VSTIKDIIIR VGRTGVLTPT AILEPVQLAG TTVSKATLHN 361 EDIIRQKDIR IGDKALVQKA GDIIPEIVQV YPEKRTGNEV PFILPVTCPE CGAEVVRVAG 421 EAAHRCTNEN CSAKSREGII HFVSRSAMDI MGLGEGIVNQ LIKGGLVKDP ADLYDLKYED 481 LIRQERMGAR SSQKLLAAIE ASKNNSLGQL LFGLGIRHVG ERAAKILARQ FGSMQALMQA 541 TAEDLTGISE IGPRIAESIM EYFSRQENQG LIERLSKAGV NMLEEVEQTE STDQTLSGKT 601 FVVTGTLEGF SRQEAQRAIE ERGGKVSGSV SKKTNYVVVG ENPGSKHDKA RQLGITILTE 661 QDFVKLLQQQ //