LOCUS ABO50829.1 1225 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 DNA polymerase III catalytic subunit, DnaE type protein. ACCESSION CP000612-2277 PROTEIN_ID ABO50829.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_2319" /note="KEGG: mta:Moth_1872 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein" /transl_table=11 /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004805" /db_xref="InterPro:IPR011708" BEGIN 1 MLEGKVVPEN QFVHLHVHTE YSLLDGASRI NQMAKQAKES GMNSLAITDH GCMFGVVDFY 61 KVCHKEGVKP ILGCEVYVAP RRRIDRTPKL DDQPNHLVLL AENQEGYKNL LKLVSLGYTE 121 GFYYKPRVDK ELLQRYHKGL IALSACLAGE VADKILGSQP EKARQAAREY VDIFGKDNFF 181 LELQDHGYQE QRTVNRELLK IAKELQIPLV ATNDVHYLKR EHAEIQDVLL CIQTGKSINT 241 PGRMKFESQE MYLKSPHEMN LLFAEIPDAL SNTLRIAERC QVDLEFGKYH LPYFTVPEES 301 SPAQYLREKC LEGAIKRYGH CSGPVQERLE YELNVIGKMG YDEYFLIVWD FIHYARQKGI 361 AVGPGRGSAA GSIVSYALGI TNIDPLKYGL LFERFLNPER ISMPDIDIDF DYERRGEVIE 421 YIVQKYGTDR VAQIITFGTM AARAAIRDVG RALDMPYGDV DRVAKLVPTE LNITIAKALT 481 SSPDLKAAYD QDPEVKRLVD TAAALEGMPR HASTHAAGVV ISREPLVEYL PLSKTSDGLV 541 TTQFPMTTVE ELGLLKMDLL GLRNLTVISE TVNLIEQIKE TKLDINTIPL DDQATFDMLT 601 RGEGVGVFQL ESSGMRNILR ELKPNAFEDI VALVALYRPG PLGSGMVEDF IQRKHGQNKV 661 DYFHPDLEPI LKETYGVILY QEQVMMIARI MAGYSLGQAD ALRKAMGKKI AKIMGMHRDW 721 FINGSTLDDK GKPLKNPIPG AVARGYSRQL AEKMFDLMEY FAGYGFNKSH SAAYALVSYQ 781 TAYLKANYPV EYMAALLTSV RDNTDKVVLY IDECRRMGIQ VLPPDINLSR ENFTAANGAI 841 RFGMAAVKNV GWGAVQEIIQ IREKKGPFTG FYDLCGRLDT RIANRRVLES LIKAGALDAF 901 GYRSQLLAGL DTGLEHAARS QRDREQGQVS LFDLMSESPA QVMELKLPHV PRLTSRQQLE 961 MEKEALGLYI SGHPLSEFGW LLDQLEVQRV VHLAELPDGN NLLVAGIIST IKRITSRKGD 1021 PMAFLTLEDL TGSCEVVVFP QVYRRHFSLL DLKVPLLLKG KLNNNGEETK ILAEEIQPLE 1081 NVTCELWLRL SENVISKELE ERLISHPGSS PVFLFYPEDR HKVQLEKEVS LSLNLKRSLT 1141 SLLGEDNILL RFNQPLKAPV AAARDTSRVK EVPGRYTVAK TVKASQPEQP KINPLPRSGL 1201 VKPVTISSGP FDPDTYPVPE SLLDL //