LOCUS ABO50502.1 710 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 DNA topoisomerase I protein. ACCESSION CP000612-1950 PROTEIN_ID ABO50502.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_1984" /EC_number="5.99.1.2" /note="KEGG: mta:Moth_1026 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein" /transl_table=11 /db_xref="InterPro:IPR000380" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005733" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" /db_xref="InterPro:IPR013498" BEGIN 1 MSKTLVIVES PAKAKSIGKY LGKNYTVKAS MGHVRDLPKS QFGVDVENAF SPKYITIRGK 61 GDILKELRSA VKKVDHVLLA SDPDREGEAI AWHLTKLLEI DEETPCRIEF NEITKNAIQA 121 AVKQPRRIDV DRVNAQQARR ILDRLVGYNL SPLLWRKVKK GLSAGRVQSV AVRLICDREE 181 EIQAFIPEEY WTLTGKFLKS AKSPFEAKLH KHKNKKIVIP NQETMDKILA ELKGAAYVVS 241 NVTRKERLRN PAPPFTTSSL QQEASRKLNF TSRKTMVVAQ QLYEGIDLGK EGPVGLVTYI 301 RTDSTRVSET AIEETRSFIM ERFGPAYVPK QPRQVVAKGK VQDAHEAIRP TSVNRDPDSI 361 KQYLTNDQFK LYKLIWSRFL ASQMASAVID TTSMDISAGD YLFRATGSII KFPGFMQVYI 421 EGNDDGHKEE ESVLPELAKG DKVQAKDLTP KQHFTQPPPR YTDATLVKVL EEKGIGRPST 481 YAPIVETIQR RGYVVRENKQ FYPTELGVIV VDLLKNHFPE IINVEFTADM EKKLDQIAEG 541 EQQWAGVLRD FYEPFSQTLE TAEEAIGKVQ VADEVSEEIC EQCGRNMVIK LGRYGKFLAC 601 PGFPDCRNTK PLLEPTGVGC PKCEGEMVLR RSKKGRKFYG CSRYPECEFV TWDMPTKEKC 661 TQCGEMMVEK KSRGKEKVLQ CVNEHCPSKG EKAASNINGN KKKTVKNNKK //