LOCUS ABO50127.1 883 aa PRT BCT 28-JAN-2014
DEFINITION Desulforamulus reducens MI-1 DNA polymerase I protein.
ACCESSION CP000612-1575
PROTEIN_ID ABO50127.1
SOURCE Desulforamulus reducens MI-1
ORGANISM Desulforamulus reducens MI-1
Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae;
Desulforamulus.
REFERENCE 1 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Desulfotomaculum reducens MI-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000266
Source DNA and bacteria available from Bradley M. Tebo
(tebo@ebs.ogi.edu)
Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Desulforamulus reducens MI-1"
/mol_type="genomic DNA"
/strain="MI-1"
/type_material="type strain of Desulfotomaculum reducens"
/db_xref="taxon:349161"
protein /locus_tag="Dred_1599"
/note="KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA
polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3'
exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix
domain protein, class 2"
/transl_table=11
/db_xref="InterPro:IPR001098"
/db_xref="InterPro:IPR002298"
/db_xref="InterPro:IPR002421"
/db_xref="InterPro:IPR002562"
/db_xref="InterPro:IPR008918"
BEGIN
1 MSLDTIIIID GNSLIHRAFH AIPLLSNSKG VITNAVYGFT NMVLKVIKEQ EPGLVAVAFD
61 KGKTTFRNQE YAAYKGTRKA TPDELRPQFI LARDILGAMR IPFFELDGFE ADDLIGTIAC
121 QAEATGLNVL ILTGDRDALQ LVSPKTKVML TRKGITEIDL FDEGKVWDKY GVTPSQVVDL
181 KGLQGDTSDN IPGVAGIGEK TASVLIKEYG SVEEILKNID KLSPRHQKLL RGNEEIALLS
241 KKLATIIRDV PMELDLSECS WHGPDNQKLL EIAKELEFKT LIKQLTSGQK FIKQSQDSGT
301 SADLPPLETY QVGYLNVTDQ DALDELLIEV SRQGKVAIYL EGLRNQGIDT AYLAMEDHDI
361 YRLAIQNKDS DSDPCLTVLK AICECESVKK YFHDAKQALW MLHHHSIELK ALAADTMVSA
421 YLLNPTASNY DINDVALEHL GMVLPAEGET AMASRAEAIR RLAQKLFEKL AERQEDRLLT
481 QVELPLVRIL SEMEIAGVAV DKQGLQDMSV ELQTVTETLT TKIHELAGEN FNINSPKQLG
541 PILFEKLKLP VLKKTKTGYS TDAEVLEKLA EEHEIVALIL EYRQMAKLKS TYTDGLAALV
601 DPQTGRLHST FHQTVTATGR LSSAEPNLQN IPIRLETGRK IRKVFIPRQR GNLILTADYS
661 QIELRVLAHM SQDESFLDAF RQGQDIHTRT ASEVFGVPMD QVTSEMRSRA KAVNFGIVYG
721 ISDFGLARDL KVSRKEAQGY IDHYFARCPG VRQYIDRVIK EAKETGYVNT LLNRRRYLPE
781 LFSKNFNIRN FGERAAMNTP IQGTAADIIK LAMVKISQQL KEQNLSSQMV LQVHDELIFD
841 APENEIESLI MLVRQSMENA LQLDVPLVVD IKLGPNWYEA KPI
//