LOCUS ABO48757.1 1185 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 DNA-directed RNA polymerase subunit beta' protein. ACCESSION CP000612-205 PROTEIN_ID ABO48757.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_0208" /EC_number="2.7.7.6" /note="KEGG: dsy:DSY0464 hypothetical protein; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein" /transl_table=11 /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" BEGIN 1 MLELNNFDSI RIGLASPDKI RQWSSGEVKK PETINYRTLK PERDGLFCER IFGPTRDWEC 61 HCGKYKRVRY KGVVCDRCGV EVTRSKVRRE RLGHIELAAP VSHIWYFKGI PSRMGLLLDM 121 SPRALEKVLY FVSYIVIEPG DTPLLKKQLL TETEYREYRD KFGNNFKAGM GAEAIKVLLV 181 EINLEELARE LRQELKEVSG QRKIRAIRRL EVVEAFKKSG NRPEWMIMDV VPVIPPELRP 241 MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPDII VRNEKRMLQE AVDALIDNGR 301 RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPRL KMHQCGLPKE 361 MALELFKPFV MKKLVNDGHA HNIKSAKRMV ERVRPEVWDV LEDVIKEHPV MLNRAPTLHR 421 LGIQAFEPVL VEGRAIKIHP MVCTAYNADF DGDQMAVHVP LSAEAQAEAR LLMLAANNIL 481 NPKDGKPVAS PTQDMVLGSY YLTMDRDGDL GEGLIFKDEQ EAMLAYDNKQ VSLQAKITVR 541 RKNGERLQTT VGRIIFNEVI PEELGYINKV CDKKTLSKIV ADCYRRLGNA HTAELLDGIK 601 ELGYKYSTRA GITIGVPDIT IPEAKKEILA KAEEQVNKIE TQFRRGLITE DERYRKVIGI 661 WNDATDKVTK ALMATLDKFN NVYMMATSGA RGNIQQIRQL AGMRGLMADP SGRIIDLPIK 721 ANFREGLTVL EYFISTHGAR KGLADTALRT ADSGYLTRRL VDVAQDVIVR EDDCGTTEGI 781 EVREIRDGTE GIEKLHERLE GRVPMEVVVH PETGEVLISQ EQVDNHQVMT EEQAQAIEDA 841 GIEKVKIRSV ITCKTRYGVC KHCYGKNLAT GGNIDIGEAV GIIAAQSIGE PGTQLTMRTF 901 HTGGVAGDDI TQGLPRVEEL FEARRPKGQA IVAEEDGSIA IREVKGRREI EITKDNGEKN 961 VYAVPFGARI KVKEGQRIEA GDELTEGSVN PHDLLKIKGP AGVQVYLLQE VQRVYRLQGV 1021 EINDKHIEVM IRQMLRKVKI EEAGDTELLP GGLIDIFEFE EENRKAVEQG GEPAVAKPVL 1081 LGITKASLAT DSFLSAASFQ ETTRVLTEAA IKGKMDPLLG LKENVIIGKL VPAGTGMSRY 1141 RNIEVLEEGQ PFLEEDRDIL LPERDRDYNF LSDEEKIDFD LTLEK //