LOCUS       ABO48661.1              1169 aa    PRT              BCT 28-JAN-2014
DEFINITION  Desulforamulus reducens MI-1 transcription-repair coupling
            factor protein.
ACCESSION   CP000612-109
PROTEIN_ID  ABO48661.1
SOURCE      Desulforamulus reducens MI-1
  ORGANISM  Desulforamulus reducens MI-1
            Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae;
            Desulforamulus.
REFERENCE   1  (bases 1 to 3608104)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
            Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
            Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Desulfotomaculum reducens MI-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3608104)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
            Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
            Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4000266
            Source DNA and bacteria available from Bradley M. Tebo
            (tebo@ebs.ogi.edu)
            Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
                 Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES             Qualifiers
     source          /organism="Desulforamulus reducens MI-1"
                     /mol_type="genomic DNA"
                     /strain="MI-1"
                     /type_material="type strain of Desulfotomaculum reducens"
                     /db_xref="taxon:349161"
     protein         /locus_tag="Dred_0111"
                     /note="KEGG: mta:Moth_0081 transcription-repair coupling
                     factor; TIGRFAM: transcription-repair coupling factor;
                     PFAM: helicase domain protein; transcription factor CarD;
                     TRCF domain protein; DEAD/DEAH box helicase domain
                     protein; SMART: DEAD-like helicases-like"
                     /transl_table=11
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR003711"
                     /db_xref="InterPro:IPR004576"
                     /db_xref="InterPro:IPR005118"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR014021"
BEGIN
        1 MKGLLRPLES TTEYQHLLQG LEKGFRQQMV FGLSGSQRSY LFAGLAHGWQ SVLIVTPGET
       61 EAGTLADDLA TLLPEVSVQP FPVWQLLPYQ VLAHSNEVLA QRLRVLEKLS TGKPTVVVTS
      121 VDALLRRLTP PEVFRCAKVK LSLGQQVDLE KLRFELVELG YTRVDLVEGR GQFSSRGGIL
      181 DIYPMSEALP VRIEFFDDEV DSIRHFEVDN QRSLDKLKEI NISPCRELVV TPAGWQRCEE
      241 NYSLEFKNQL KKLQRSGSVD AVHQLSSQGA MLLEQIRRRV PFDGMEQLLY YFYPEPITLL
      301 DYFTAAPLLL VDDPIRFKEV AETILKERNE TYTDLLGKGK VLPGYFSSYL EWRQLLASIE
      361 RQQTIFCSFL PRNPQYLRPQ NVVNFPAKAM HSFLGHAEVL ADEIRHWRRR GYAITLLVSS
      421 EERAANLLKT LKDSKIDAFR VKQLDQEVRE GNVVITVGQM ANGFELISAR LVVITDAEIF
      481 GQRKKARKQR SRPDAKMEPL ADLKAGDYVV HVNHGIGRYL GVITLDIGAL QKDYLQLQYA
      541 GEDKLYVPTD QVGMLQKYLG AESDHPKLSR LGGTEWSKAK AKVREAVKDM ADELLALYAS
      601 RQTVRGHAFS KDMPWQAEFE ALFPYEETPD QLRAIGEVKQ DMEKVRPMDR LLCGDVGYGK
      661 TEVALRAAFK AVMDNKQVAV LVPTTILAQQ HYNTFRERFA NYPIRIEMLS RFRTAKEQRQ
      721 VLAGLATGEV DIVVGTHRLV QNDIVFKDLG LLVVDEEQRF GVSHKERLKQ IRKNVDVLTL
      781 SATPIPRTLH MSLVGVRDTS LLETPPEERF PVQTYVLEED PVLIREAIKR ELNRGGQVYF
      841 VHNRVMDLDR LAGWLQNLVP EARIGMAHGQ MKEDELEQIM IEFMDGEYDV LVCTTIVETG
      901 LDISNVNTLI VKDADHFGLS QLYQLRGRVG RTNRLAYAYF LFRRDKVLTE ISERRLSAIR
      961 EFTEFGSGYK IAMRDLEIRG AGNILGAQQH GHIAEVGFDL YCRLLEEAVQ EARGEKVEEV
     1021 VETSVEIPVE AYVPDTYVPD GNQKVELYRR LAAMRDLVEI SDLEEELVDR YGDLPESVRC
     1081 LLQVTKLKIM GRGLKVKSIS RSQGSFRILF VPEAPLDGEK LVSISEKYKN NVKFHTSSEG
     1141 FEIKLITKDK GDVSLRKLEQ LESFMGRLK
//