LOCUS ABO48661.1 1169 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 transcription-repair coupling factor protein. ACCESSION CP000612-109 PROTEIN_ID ABO48661.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_0111" /note="KEGG: mta:Moth_0081 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like" /transl_table=11 /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR003711" /db_xref="InterPro:IPR004576" /db_xref="InterPro:IPR005118" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" BEGIN 1 MKGLLRPLES TTEYQHLLQG LEKGFRQQMV FGLSGSQRSY LFAGLAHGWQ SVLIVTPGET 61 EAGTLADDLA TLLPEVSVQP FPVWQLLPYQ VLAHSNEVLA QRLRVLEKLS TGKPTVVVTS 121 VDALLRRLTP PEVFRCAKVK LSLGQQVDLE KLRFELVELG YTRVDLVEGR GQFSSRGGIL 181 DIYPMSEALP VRIEFFDDEV DSIRHFEVDN QRSLDKLKEI NISPCRELVV TPAGWQRCEE 241 NYSLEFKNQL KKLQRSGSVD AVHQLSSQGA MLLEQIRRRV PFDGMEQLLY YFYPEPITLL 301 DYFTAAPLLL VDDPIRFKEV AETILKERNE TYTDLLGKGK VLPGYFSSYL EWRQLLASIE 361 RQQTIFCSFL PRNPQYLRPQ NVVNFPAKAM HSFLGHAEVL ADEIRHWRRR GYAITLLVSS 421 EERAANLLKT LKDSKIDAFR VKQLDQEVRE GNVVITVGQM ANGFELISAR LVVITDAEIF 481 GQRKKARKQR SRPDAKMEPL ADLKAGDYVV HVNHGIGRYL GVITLDIGAL QKDYLQLQYA 541 GEDKLYVPTD QVGMLQKYLG AESDHPKLSR LGGTEWSKAK AKVREAVKDM ADELLALYAS 601 RQTVRGHAFS KDMPWQAEFE ALFPYEETPD QLRAIGEVKQ DMEKVRPMDR LLCGDVGYGK 661 TEVALRAAFK AVMDNKQVAV LVPTTILAQQ HYNTFRERFA NYPIRIEMLS RFRTAKEQRQ 721 VLAGLATGEV DIVVGTHRLV QNDIVFKDLG LLVVDEEQRF GVSHKERLKQ IRKNVDVLTL 781 SATPIPRTLH MSLVGVRDTS LLETPPEERF PVQTYVLEED PVLIREAIKR ELNRGGQVYF 841 VHNRVMDLDR LAGWLQNLVP EARIGMAHGQ MKEDELEQIM IEFMDGEYDV LVCTTIVETG 901 LDISNVNTLI VKDADHFGLS QLYQLRGRVG RTNRLAYAYF LFRRDKVLTE ISERRLSAIR 961 EFTEFGSGYK IAMRDLEIRG AGNILGAQQH GHIAEVGFDL YCRLLEEAVQ EARGEKVEEV 1021 VETSVEIPVE AYVPDTYVPD GNQKVELYRR LAAMRDLVEI SDLEEELVDR YGDLPESVRC 1081 LLQVTKLKIM GRGLKVKSIS RSQGSFRILF VPEAPLDGEK LVSISEKYKN NVKFHTSSEG 1141 FEIKLITKDK GDVSLRKLEQ LESFMGRLK //