LOCUS ABE40635.1 1130 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 Outer membrane autotransporter
barrel protein.
ACCESSION CP000283-3395
PROTEIN_ID ABE40635.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_3411"
/transl_table=11
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
BEGIN
1 MDVPTVMSGG IAKGRVRIAS VAAARIKHLL LSTALAGIVV YPQALLAQSW NGAVDADFSN
61 GANWSTGVAP TSTDVSTIAS TPTTPVVAAT TANSGQITMS GATLGINAGA TLVLNTLTLT
121 GASSVTGAGA IATNLLHLDS GSVGTDVTLA TLATMGGGTF GGAISGAGQL LVSSGFNFLT
181 GANTYSGGTD INTNAFLTVG DSATSGSITG DVLNNGNLTF TRSDTTSYGG VISGIGVVNK
241 NGAGTLMLSG ANTYSGATRI LNGTLQTSAN NVLSSASALT ISAGATLELG NTQQTVASLA
301 GAGTINVGAS SNGFTFGADN SSTSFSGTVT GGFMRFYKEG TGTFSFSGTG PTSGAMQVDG
361 GTLALAGAAD FSGASVNLQA NTTLDISGAN AGISIKGLQG GLSSTAVHLG SRTLTVQRTD
421 FAFGNNFSGV IDGSGGLTVG QNSTLNLFGV NTYTGPTTLS SASATLDLRH VSAIAASSEV
481 DLAASGATLG ISNAGGDATI QSLRGVAGSI LTLRNNNLVI TNAASDFAGI IKPVFGAPTG
541 GVILNGGHQT LSGINTYLGA TTVNAGTLSV NGSIATSALT TVNAGGTLGG AGTVGNTTIN
601 GGALAPGNSI GTLNVNGNLS FTAASSYMVE FSPTTADRTN VTGTATLGGA TVNAIFASGS
661 YVERQYTILN ATGGIVGTFG PVVNSNLPSG FKSSLGYDAN NAYLKLALDF TPTPTPTPTP
721 TPTPAPEPSP LPINSGLNGN QTQVANALSN YFARAGSIPI VFGALTPAGL SLAAGETPTG
781 AQQTTFDAMN MFMGVLTDPF ANGRGLPNAA SGASSFADGN ASLGNRNGAA RDAHAMITKA
841 VVKPPVEARW NVWAAGFGGA QTTDGNATLG STTATSRLYG IAAGADYWLS PQTVAGFAMA
901 GGATSFGLAN GLGSGRSDLI QAGGFVRHSV GAAYLTAAAA YGWQDITTER SVAVGGINQL
961 QGRFNAHAFS GRLEAGHRTV ASAFGGIGLT PYAATQVTAF ELPAYAEQML SGANAFALSY
1021 ASKTVTATRS EFGLRSDKSY ALSNALLTLR GRAAWAHDFN VDRSIAATFQ ALPGASFVVD
1081 GARPARDAAL TTVSAEIAWL NGLSLAAAFE GEFSDVTRSY AGKGTLRYIW
//