LOCUS ABE40259.1 914 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 DNA topoisomerase I protein.
ACCESSION CP000283-3019
PROTEIN_ID ABE40259.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_3033"
/EC_number="5.99.1.2"
/transl_table=11
/db_xref="InterPro:IPR000380"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR003601"
/db_xref="InterPro:IPR003602"
/db_xref="InterPro:IPR005733"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
BEGIN
1 MNLVIVESPA KAKTINKYLG SSYEVLASFG HVRDLPAKNG SVDPDANFQM IWEIDPKAAG
61 RLNDIAKALK GADKLILATD PDREGEAISW HVLEVLKQKR ALKDQKVERV VFNAITKQSV
121 TDAMKHPREI DGALVDAYMA RRALDYLVGF TLSPVLWRKL PGARSAGRVQ SVALRLVCDR
181 EMEIEKFVPR EYWSLIATLT TPRGDSFEAR LVGADGKKIQ RLDIGTGVEA EDFKQAIEQA
241 NFKVSSVEAK PARRNPYAPF TTSTLQQEAS RKLGFAPAHT MRIAQRLYEG IDIGGETTGL
301 ITYMRTDGVQ IDPSAITEAR KVIAEDYGSA YVPDTPRQYQ AKAKNAQEAH EAIRPTDMSR
361 RPADVNGRLD SDQARLYELI WVRTVASQME SAEMERTTVD IEAKAGSRVL ELRATGQVVK
421 FDGFLAAYQE GRDDDSEDED SRRLPAMSED EALKRDALAV TQHFTEPPPR FSEASLVKRM
481 EELGIGRPST YASILQVLKD RGYVKLEKKR LHGEDKGRVV IAFLESFFAR YVEYDFTAAL
541 EEKLDRISNN EISWQQVLRD FWTDFIGAVD DIKELRVAQV LDVLDEMLGP HIYAPREDGG
601 DPRQCPSCGT GRLNLKAGKF GAFVGCSNYP ECRHTRPLAA DGGGGDADRV LGIDPDTGFE
661 VAVKSGRFGP YIQLGEAKDY AEGEKPKRAG IPKGTSPSDV ELEMALRLLA LPREVGKHPE
721 TGEPIKAGIG RFGPYVQHEK TYASLEAGDD VHNIGLNRAV TLIAEKIAKG PSKRRFGADP
781 GKPLGDHPTL GGVAVKAGRY GAYVTAGGVN ATIPNDKTQD TITLAEAIAL IDERAAKGGG
841 GKAKKKAPAK KAAASGEAKP KKAAAKKTKP KAETAAASKA RAPVTAKTSV AKASTAKATA
901 KPKSPAKKSA AKNG
//