LOCUS ABE37442.1 1159 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 DNA helicase/exodeoxyribonuclease
V, subunit A protein.
ACCESSION CP000283-202
PROTEIN_ID ABE37442.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_0202"
/EC_number="3.1.11.5"
/transl_table=11
/db_xref="InterPro:IPR000212"
BEGIN
1 MSAPRSIPDQ ARERQILASD PSASVFVSAN AGSGKTHVLV QRVIRLLLDG VPPERILCIT
61 FTKAAAANMA ERVFTTLGRW VTLDDEALTA AIKATGIKSV GPSLLAQARK LFACALETPG
121 GLKVQTIHAL CTRLLQQFPF EANVPARFSV LDDRDQAELM QRASLAVLLQ AAAAPDSAAG
181 RALTLAMTSA ADVTFREVVQ EACTRRDRFL AWITQAGGVD GAMAQLSATL GVAPQDRCED
241 VERDILDGPN LPRAQWSTAA AMFESGSAND QAQAKRLRAA LALSDVAQLD KYCEVFFTKD
301 GPRKSLATKK IADAAPGFVE DLKREGARLE DLLERRRALL MRERTRALLV IAADVAERIR
361 REKQERGLLD YDDLIDKTLA MLDSGASSWV HFKLDRGVDH VLIDEAQDTS PKQWDIVAHL
421 IAEFTAGEGA RDGVRRTVFA VGDEKQSIFS FQGAVPKEFA ERRDLLQRRF HGAGLNFEKV
481 SFNYSFRSGA TILQSVDHVF RDPDIYRSIH ADAAYPLHQS LADAGPSVID LWPLELPDDK
541 QNIEGWRAPF DAVSETSPEV RLAQKVQAEI ASLIAGGTMT GSLGDRRRLR FGDVLVLVRR
601 RGSAFDAVIQ ALKRGGIPVA GADRLKLTEH IAIIDLMNLA DALLLPQDDL ALAVALKSPL
661 FGLDDDDLFR LAWRRKGSLR HALREKAAGD AKLATALQRL DACAERSQTD TPFGFYAWLL
721 GGVGGRARIL RRLGPEANDA LDEFLELALS YEQKAAPSLQ GFMAWLRAAD TEIKRDMEIS
781 RDEVRVMTVH GAKGLEAPVV FLVDTTSSPS DTQRLNLIRL PGGNAQPGSV GAMVWAGRKS
841 NDPRVVEQAR AEMVSETEDE YRRLLYVAMT RAADRLIVGG CMPGNRNEVR ALSWYDLISK
901 GLENSGLTMR TAPPDGAVKR YCRPEDEVTE IAPSEQAPAA PPLVMPDWLH KAAPALRRPD
961 NLLRPSDPDD ADHRRIRRGE TEAQRQRALQ RGTLVHRLLQ SLPDLPADIR ANAADRFLLR
1021 NADDWSPQER DALAARVLEV ISDDRFAAVF APGSRAEVPI VGRLQRHGEP VLISGQIDRL
1081 VVTDAEVLIV DYKTNHAPPR SLAETPPAYV RQLALYRAVL SLLYPQRIVR AALLWTEAPE
1141 IMEISAPALD AEQAALTVA
//