LOCUS ABB55283.1 311 aa PRT HTG 12-NOV-2005
DEFINITION Asparagus officinalis hypothetical protein protein.
ACCESSION DQ273271-9
PROTEIN_ID ABB55283.1
SOURCE Asparagus officinalis (garden asparagus)
ORGANISM Asparagus officinalis
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Asparagaceae; Asparagoideae; Asparagus.
REFERENCE 1 (bases 1 to 112052)
AUTHORS Jernej,J., Suzuki,G., McCallum,J., Cheung,F., Arbogast,T.,
Tallon,L.J., Smith,S., Utterback,T., Havey,M.J. and Town,C.D.
TITLE Comparative Sequence and Genetic Analyses of the Asparagus, Onion,
and Rice Genomes Reveal Similar Structures, But No Microsynteny
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 112052)
AUTHORS Jernej,J., Suzuki,G., McCallum,J., Cheung,F., Arbogast,T.,
Tallon,L.J., Smith,S., Utterback,T., Havey,M.J. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2005) Agricultural Research Service, USDA, Dep.
of Horticulture, 1575 Linden Drive, WI 53706, USA
COMMENT Address all correspondence to: mjhavey@wisc.edu Genes were
identified by GeneMarkHMM (Mark Borodovsky,
http://genemark.biology.gatech.edu/GeneMark/), and GeneSplicer
(Mihaela Pertea and Steven Salzberg), searches of the complete
sequence against a peptide database and the plant EST database at
TIGR (http://www.tigr.org/tdb/tgi.shtml). Simple repeats are
identified by repeatmasker (Arian Smit,
http://ftp.genome.washington.edu/RM/RepeatMasker.html). This is a
first pass annotation using a combination of gene predictions,
protein and EST matches and minimum manual curation.
Transposon-related regions have not been annotated. No further
sequencing is planned.
* NOTE: This is a 'working draft' sequence. It currently
* consists of 11 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 2333: contig of 2333 bp in length
* 2334 2433: gap of unknown length
* 2434 5956: contig of 3523 bp in length
* 5957 6056: gap of unknown length
* 6057 10578: contig of 4522 bp in length
* 10579 10678: gap of unknown length
* 10679 53621: contig of 42943 bp in length
* 53622 53721: gap of unknown length
* 53722 59788: contig of 6067 bp in length
* 59789 59888: gap of unknown length
* 59889 61114: contig of 1226 bp in length
* 61115 61214: gap of unknown length
* 61215 102539: contig of 41325 bp in length
* 102540 102639: gap of unknown length
* 102640 108041: contig of 5402 bp in length
* 108042 108141: gap of unknown length
* 108142 109436: contig of 1295 bp in length
* 109437 109536: gap of unknown length
* 109537 110812: contig of 1276 bp in length
* 110813 110912: gap of unknown length
* 110913 112052: contig of 1140 bp in length.
FEATURES Qualifiers
source /organism="Asparagus officinalis"
/mol_type="genomic DNA"
/db_xref="taxon:4686"
/clone="B4-L7-94"
protein /locus_tag="10.t00026"
BEGIN
1 MESITKKDTN FPANNLATTV GATDLAAEIG ASQPRIQIPV VEEVEYEFDQ TKFEEYLSSS
61 SRSTSPRKSK KSKFSSNKKV RWYEEVEATN DDLISIDAKV ASGEAPPTSN QIKLVPTNSS
121 ITKGAVTLSK RARQRQRQRL AKQIAKAMES TDGVRYNADL KNKRGKQPQQ QMNGAPSKSP
181 MMEWVRVKRN RSTLEERIRK RRALSAQARV QAEEARRKLQ KEVAKKPPPT RKVWRPKSEA
241 AVQTKKQQLQ PPTKIQPPAN PAKSPRIPIA TPGDHAESSR RREPVLERFG PIADERSKAP
301 IQECLGSLRK P
//