LOCUS ABA56693.1 1035 aa PRT BCT 28-JAN-2014
DEFINITION Nitrosococcus oceani ATCC 19707 type I site-specific restriction-
modification system, R subunit (helicase) protein.
ACCESSION CP000127-137
PROTEIN_ID ABA56693.1
SOURCE Nitrosococcus oceani ATCC 19707
ORGANISM Nitrosococcus oceani ATCC 19707
Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
Chromatiaceae; Nitrosococcus.
REFERENCE 1 (bases 1 to 3481691)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Nitrosococcus oceani ATCC 19707
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3481691)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
Source DNA available from Dan Arp (arpd@bcc.orst.edu)
Bacteria available from ATCC: ATCC 19707
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
FEATURES Qualifiers
source /organism="Nitrosococcus oceani ATCC 19707"
/mol_type="genomic DNA"
/strain="ATCC 19707"
/culture_collection="ATCC:19707"
/type_material="type strain of Nitrosococcus oceani"
/db_xref="taxon:323261"
protein /locus_tag="Noc_0160"
/inference="non-experimental evidence, no additional
details recorded"
/transl_table=11
BEGIN
1 MRATGELELN LMPTQNSPPN IAMDKVQKTA LQQVIIDHLL SHGWQKGKAE LYDPVLALYP
61 EDLIGFIREC HSQPLPKLIQ DAPDQAVQIL LRRAAEEMDQ RGALEVLRHG FKEQENDISL
121 CQFHSYQEFH SGTLARYKKN RLRVVPNLSY SPYTHEDYIP YLDLVFFVNG VPVATLKATS
181 ESQPSLSAII RQYQRDCPPH DPRMGHEEPL LAFRKRALVH FAVSQEEVWV STRLQGLATH
241 FTPFNQGHKG GAGNPPNPAG YPTDYLWQKI FECDTWLDLL GQFIHFERKN AAWKEEKEFP
301 SETLVFPRFH QWEMVTQLAG AVRQEGPGQQ YLIQHGAGSG QRYSIAWTAH HVAALADRKH
361 QKIFTGVIVV TDCHEFHAQL QNTLYSPKYE RKQIYRLTQE IAQNCQAEWL AATLAAAGIH
421 IITVTPQAFP SVLALIQNQV IFKEHTFAVI AHQAPFPTSR SLFSRLGEVL LSESAQKEIT
481 TNTEDLLITS LTNSPPSPHI SYFLFTAAPQ EKTLALFGQP TSPALPFSDN NQPEPFHHYT
541 LQQAIEEGFM LNPLKRYMTY VTAARLAQQQ LSLNQEENLS CRIFPWMGQS PDNLNIVQKA
601 EIITEHFRHQ VVHLMNGQAK AILTTHSCQA AQRYQRTFER YIAAQQYQDV QTLTNDHQVI
661 IGAHKHQAKF SSSQLCALYI DKKFTGTDCV QTLSHLGEIH PGKEAPFILD FANPAEQVLH
721 AFRPYHPAAE IFSVSDPKLI YQLQSYLDEA RIYNWQDVES FAAAFFDTEQ TTERLNYHCQ
781 SAVERFREQY QENIKIIQTA QQAKQEATAA GDRIRRENAC HSFKQAEERK NALDRFKENL
841 LSFADCYEHL SQILDYGNQE LEKLNVYARH LYSLLGEMQQ SEAIDSPPRE FISYRLNKIC
901 ERTFKAARQE SLGEPAYNTT GESRANPWRK EASCSLLINR LKPLLAGEYL SDRDRLNYLH
961 AIKDKLLENP ALAAQLEDQR PNPIPSSDFS QIVQHTVMEN LKNHHEMAAQ LLHDEGMVKD
1021 FSRLLLDLLS NQPEQ
//