LOCUS ABA56615.1 1867 aa PRT BCT 28-JAN-2014
DEFINITION Nitrosococcus oceani ATCC 19707 UvrA family protein protein.
ACCESSION CP000127-59
PROTEIN_ID ABA56615.1
SOURCE Nitrosococcus oceani ATCC 19707
ORGANISM Nitrosococcus oceani ATCC 19707
Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
Chromatiaceae; Nitrosococcus.
REFERENCE 1 (bases 1 to 3481691)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Nitrosococcus oceani ATCC 19707
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3481691)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
Source DNA available from Dan Arp (arpd@bcc.orst.edu)
Bacteria available from ATCC: ATCC 19707
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
FEATURES Qualifiers
source /organism="Nitrosococcus oceani ATCC 19707"
/mol_type="genomic DNA"
/strain="ATCC 19707"
/culture_collection="ATCC:19707"
/type_material="type strain of Nitrosococcus oceani"
/db_xref="taxon:323261"
protein /locus_tag="Noc_0078"
/inference="non-experimental evidence, no additional
details recorded"
/transl_table=11
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004602"
BEGIN
1 MSKAFIKVKG ARQNNLKGLN LKFPLNELIV ITGVSGSGKS SLAFDTIYAE GQRRYVETFS
61 PYARQFLDRM DKPQVDRIEG IPPAIAIDQI NPVRTSRSTV GTMTELNDHL KLLFARAGKL
121 YCQGCGQGVR RDTPEGIYKE LLLHSQEQDD TPRILITFEI TVPENFSFQE VKDQLLRQGY
181 TRFHHQHDQV LEAIQDRVRL EPSRRERIME ALETALKHGR GHVTVYPLDE HRQPQQPWRF
241 SSDLHCPQCD IAYQDPFPSL FSFNSPLGAC GTCRGFGRTM GIDYDLVVPD ENKTLAEGAI
301 KPWQSASYEE CQQDLMRFAR KRGIPTRLTW RELTPEQQHW VLAGEGEWEE NKWYGVQRFF
361 DWLESKSYKM HIRVLLSKYR AYHLCPTCQG ARLKPESLLW RLGTKAGADE VLPDKRRFMP
421 AGVRFSQRRL AALPGLTLHD VMQLSLKRCQ QFFAQLTLSA PLDEAADLLL GEIRSRLNYL
481 VEVGLGYLTL DRQSRTLSGG EVQRINLTTA LGTSLVNTLF VLDEPSIGLH ARDLQRIIRI
541 LQRLRDAGNS LLLVEHDSQI MLAADRILDL GPGPGERGGQ QVFFGPPQEL MQAKRSLTGQ
601 YLTGKKRVVS ERRKTRKLPA SAYVEIRGAA EHNLKNIDVR FPLNGLVCVT GVSGSGKSTL
661 IQEILYKGLR KLKGKPVGTP GRHQALEGHE HIQTVVLVDQ SPIGKTTRSN PISYVGALDG
721 LRKAFAAEPL AQERGYHAGT FSFNTGKGRC PTCGGRGFEQ VEMQFLSDIY LRCPDCNGQR
781 YRPEILEVKL QPSAQGLGKS IAEVLAMTVA EALDFFADYP EIKRGIEPLQ AVGMGYVTLG
841 QPVPTLSGGE AQRLKLAGHL AKARGNKQGR NTLFLLDEPT TGLHFDDIAT LLQAFYRLLA
901 EGHSLVVIEH NLEVIQAADW IIDLGPEGGE GGGKVIAMGS PQKVARSQHS HTGQALRDHA
961 QAFDEIFQAA SAVGEAPAQY RTACGTAQTE AAPQESGAAA EGNGFIYIHN AREHNLKNID
1021 VQIPRERLTV ITGISGSGKS TVAFDILFAE GQRRYLESLN AYARQFVQPA ARPDLDAIFG
1081 IPPTVAIEQR TSRGGLKSTV ATLTEIYHFL RLLFVKLGQQ HCPDCKIPIE AQTLEAIQAR
1141 LMGDYRNRRL GILAPLIVAR KGYYTELAKW AAAKGFTHLR VDGTLLPTDP WPRLDRFKEH
1201 SIELPVGELK VTPAAEKELH ALLEQALNLG QGRVEILLPQ KKQKILYSTQ RACPSCSRSF
1261 GELDPRLFSF NSPQGWCPRC YGTGRVLPNF DGEQTGEEKE WAEKQGNPGQ ICPTCQGQRL
1321 QPEALAVRFQ ERNIAEFTGM PIAVAEATFQ SMKLQGRAAD IARDILPELR TRLKFLREVG
1381 LSYLTLDRAA PTLSGGEAQR IRLASQLGSN LRGVCYILDE PTIGLHPRDN RMLLNTLGKL
1441 EGQGNTIVVV EHDEDTIRRA EHVIDLGPGA GVNGGKVVAA GTVEALLQHP ESVTGRCLAQ
1501 PLPHPLMEKR RPETAEAHLE IRGASLHNLK SLTLRLPLRQ LVGVSGVSGS GKSTLIRQVL
1561 HGNLLRLLNR KQTAQHKETT TFQGCQEIRG WKAIQRVLEV DQTPIGKTPR SCPATYVGFW
1621 DSIRRLFADT PEARIRGYGA GRFSFNTKEG RCPECEGQGV KRIEMSFLPD VTVPCESCRG
1681 ARFTQETLMI RYKDKNIGEI LALSVDQAVE FFAAHKRIHR PLQLLQAVGL GYLSLGQPSP
1741 TLSGGEAQRI KLVTELAKAP LNPYRSANQH TLYLLDEPTI GLHMADVEKL IRVLHQLVEV
1801 GNTVIVIEHN LDIIAEVDWL IDLGPEGGDG GGQIVAQGTP ETVAKVKKNS YTAKFLTRFL
1861 KTRRAIN
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