LOCUS ABA56587.1 602 aa PRT BCT 28-JAN-2014 DEFINITION Nitrosococcus oceani ATCC 19707 RNA polymerase, sigma 70 subunit, RpoD protein. ACCESSION CP000127-31 PROTEIN_ID ABA56587.1 SOURCE Nitrosococcus oceani ATCC 19707 ORGANISM Nitrosococcus oceani ATCC 19707 Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus. REFERENCE 1 (bases 1 to 3481691) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Nitrosococcus oceani ATCC 19707 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3481691) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov Source DNA available from Dan Arp (arpd@bcc.orst.edu) Bacteria available from ATCC: ATCC 19707 Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. FEATURES Qualifiers source /organism="Nitrosococcus oceani ATCC 19707" /mol_type="genomic DNA" /strain="ATCC 19707" /culture_collection="ATCC:19707" /type_material="type strain of Nitrosococcus oceani" /db_xref="taxon:323261" protein /locus_tag="Noc_0045" /inference="non-experimental evidence, no additional details recorded" /transl_table=11 /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR007127" /db_xref="InterPro:IPR007624" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR007631" /db_xref="InterPro:IPR009042" BEGIN 1 MLKIMEQDRQ SQLKLLIARG KDRGYLSYSE VNDHLPDDVI DPEQIEDIIT MFNDMGISVH 61 EDMAEADALA IMDTAVADDE VAEEAAAALV SVDGEFARTS DPVRMYMREM GSVELLTREG 121 EISIAKRIEE GMRQVYTALS RFPGSVAELL CQYEKVEADE IRLADVISGF QESEEADLKE 181 SAAEEASVSS EGSTEEEESD NGLDLDRVRE QFTQLRELYE RYQAADLKDN DRALAELSEC 241 FLQLKLVPRL SQRLIENLRG VVAEIRVLER SIMKIAVNSA QMPRKDFLSS FQKQETNLNW 301 VEKHIRAKKH YSSVLRKQGD AIQKAQEKLI VLEQRAGMSI TQIKEINRSL SIGEARARRA 361 KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI 421 RQAITRSIAD QARTIRIPVH MIETINKLNR VSRQMLQEMG REPTPDELAE RVEMPKDKVR 481 KVLKIAREPI SMETPIGDDE DSHLGDFVED AAVISPPDSA IFSGLRETTQ LILAGLTPRE 541 AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPSRSE QLRSFLDIEN 601 NN //