LOCUS       AAZ20862.1               595 aa    PRT              BCT 31-JAN-2014
DEFINITION  Candidatus Pelagibacter ubique HTCC1062 RNA polymerase
            sigma factor protein.
ACCESSION   CP000084-37
PROTEIN_ID  AAZ20862.1
SOURCE      Candidatus Pelagibacter ubique HTCC1062
  ORGANISM  Candidatus Pelagibacter ubique HTCC1062
            Bacteria; Pseudomonadota; Alphaproteobacteria; Candidatus
            Pelagibacterales; Candidatus Pelagibacteraceae; Pelagibacter.
REFERENCE   1  (bases 1 to 1308759)
  AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S., Podar,M., Vergin,K.L.,
            Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordewier,M.,
            Rappe,M.S., Short,J.M., Carrington,J.C. and Mathur,E.J.
  TITLE     Genome streamlining in a cosmopolitan oceanic bacterium
  JOURNAL   Science 309 (5738), 1242-1245 (2005)
   PUBMED   16109880
REFERENCE   2  (bases 1 to 1308759)
  AUTHORS   Giovannoni,S.J., Bibbs,L., Cho,J.C., Stapels,M.D., Desiderio,R.,
            Vergin,K.L., Rappe,M.S., Laney,S., Wilhelm,L.J., Tripp,H.J.,
            Mathur,E.J. and Barofsky,D.F.
  TITLE     Proteorhodopsin in the ubiquitous marine bacterium SAR11
  JOURNAL   Nature 438 (7064), 82-85 (2005)
   PUBMED   16267553
REFERENCE   3  (bases 1 to 1308759)
  AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S.A., Podar,M., Vergin,K.L.,
            Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordweir,M.,
            Rappe,M.S., Short,J., Carrington,J.C. and Mathur,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2005) Microbiology, Oregon State University,
            Corvallis, OR 97331, USA
FEATURES             Qualifiers
     source          /organism="Candidatus Pelagibacter ubique HTCC1062"
                     /mol_type="genomic DNA"
                     /strain="HTCC1062"
                     /type_material="reference material of Candidatus
                     Pelagibacter ubique"
                     /db_xref="taxon:335992"
     protein         /gene="rpoD"
                     /locus_tag="SAR11_0037"
                     /note="rpoD (Sigma-70)"
                     /transl_table=11
BEGIN
        1 MGRGTHRGFI TFDELNKSLG KRNLSDENLE QAFMHILDES VALVEKKSDF KVLRKKENSS
       61 KEEGKTIEKS DDPIRMYLRE MGGVELLSRE GEIAIAKRIE AGKDVMLIAL AQSPITAQQF
      121 VEWDEKLQSD EILVREIIDI DTNYMEDENT GPSAKQRNSG ETDKNEENNG DDDEFNPTLA
      181 AMETEIKPKV LKTVNTLTKE YAKLIKYQKE KLDCILNAVS FSAAKEKGHD KIVSDILENI
      241 KSLQLSPSVL EELVQKHYVE NKKIVSLEGN LLRLAMDQKI PRNEFIKFYI GNEINPNLKK
      301 FLDTNPMWKQ FFSKNKDEFK NIRERLIEIS HKLGISVTDY KKIVSRVQKG EKESRIAKKE
      361 MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS TYATWWIRQA
      421 ITRSIADQAR TIRIPVHMIE TINKIVRTQR LILSEFGREA TPEELAQKLR MPLDKVRKVL
      481 KISKEPVSLE KPVGDEEDSS LGDFIEDTKA LAPLEQAIKS NLSEATTKIL STLTPREERV
      541 LRMRFGVGMN TDHTLEEVGL QFSVTRERIR QIEAKALRKL KHPSRSKQLK SFLES
//