LOCUS AAZ20862.1 595 aa PRT BCT 31-JAN-2014 DEFINITION Candidatus Pelagibacter ubique HTCC1062 RNA polymerase sigma factor protein. ACCESSION CP000084-37 PROTEIN_ID AAZ20862.1 SOURCE Candidatus Pelagibacter ubique HTCC1062 ORGANISM Candidatus Pelagibacter ubique HTCC1062 Bacteria; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; Pelagibacter. REFERENCE 1 (bases 1 to 1308759) AUTHORS Giovannoni,S.J., Tripp,H.J., Givan,S., Podar,M., Vergin,K.L., Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordewier,M., Rappe,M.S., Short,J.M., Carrington,J.C. and Mathur,E.J. TITLE Genome streamlining in a cosmopolitan oceanic bacterium JOURNAL Science 309 (5738), 1242-1245 (2005) PUBMED 16109880 REFERENCE 2 (bases 1 to 1308759) AUTHORS Giovannoni,S.J., Bibbs,L., Cho,J.C., Stapels,M.D., Desiderio,R., Vergin,K.L., Rappe,M.S., Laney,S., Wilhelm,L.J., Tripp,H.J., Mathur,E.J. and Barofsky,D.F. TITLE Proteorhodopsin in the ubiquitous marine bacterium SAR11 JOURNAL Nature 438 (7064), 82-85 (2005) PUBMED 16267553 REFERENCE 3 (bases 1 to 1308759) AUTHORS Giovannoni,S.J., Tripp,H.J., Givan,S.A., Podar,M., Vergin,K.L., Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordweir,M., Rappe,M.S., Short,J., Carrington,J.C. and Mathur,E.J. TITLE Direct Submission JOURNAL Submitted (07-JUL-2005) Microbiology, Oregon State University, Corvallis, OR 97331, USA FEATURES Qualifiers source /organism="Candidatus Pelagibacter ubique HTCC1062" /mol_type="genomic DNA" /strain="HTCC1062" /type_material="reference material of Candidatus Pelagibacter ubique" /db_xref="taxon:335992" protein /gene="rpoD" /locus_tag="SAR11_0037" /note="rpoD (Sigma-70)" /transl_table=11 BEGIN 1 MGRGTHRGFI TFDELNKSLG KRNLSDENLE QAFMHILDES VALVEKKSDF KVLRKKENSS 61 KEEGKTIEKS DDPIRMYLRE MGGVELLSRE GEIAIAKRIE AGKDVMLIAL AQSPITAQQF 121 VEWDEKLQSD EILVREIIDI DTNYMEDENT GPSAKQRNSG ETDKNEENNG DDDEFNPTLA 181 AMETEIKPKV LKTVNTLTKE YAKLIKYQKE KLDCILNAVS FSAAKEKGHD KIVSDILENI 241 KSLQLSPSVL EELVQKHYVE NKKIVSLEGN LLRLAMDQKI PRNEFIKFYI GNEINPNLKK 301 FLDTNPMWKQ FFSKNKDEFK NIRERLIEIS HKLGISVTDY KKIVSRVQKG EKESRIAKKE 361 MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS TYATWWIRQA 421 ITRSIADQAR TIRIPVHMIE TINKIVRTQR LILSEFGREA TPEELAQKLR MPLDKVRKVL 481 KISKEPVSLE KPVGDEEDSS LGDFIEDTKA LAPLEQAIKS NLSEATTKIL STLTPREERV 541 LRMRFGVGMN TDHTLEEVGL QFSVTRERIR QIEAKALRKL KHPSRSKQLK SFLES //