LOCUS       AAL23170.1              1108 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative periplasmic binding protein protein.
ACCESSION   AE006468-4207
PROTEIN_ID  AAL23170.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /gene="yjeP"
                     /locus_tag="STM4347"
                     /note="similar to E. coli putative periplasmic binding
                     protein (AAC77119.1); Blastp hit to AAC77119.1 (1107 aa),
                     89% identity in aa 1 - 1107"
                     /transl_table=11
BEGIN
        1 MRLIIAFLMA WCLSTGAFAA TAPDAKQITQ ELEQAKAAKP AQPEAVEALQ TALNALEERK
       61 GSLERAKQYQ HVIDNFPKLS ATLRAQLNNL RDEPRSVPPE MSTEALNQEI LQVSSQLLDK
      121 TREAQQEQER VREIADSLSQ LPQQQNDARR QLNEIERRLG AAGGSAALSQ AQSLSMQAES
      181 AKLKALVDEL ELAQLSANNR QELARLRSEL AEKQSQQLDA YLQALRNQLN SLRQREAERA
      241 LESTELLAEN SAGLPEGIVE QFKVNRELSQ ALNQQAQRMD LVASQQRQAT SQTLQVRQAL
      301 NTLREQSQWL GVSNMLGEAL RAQVARLPEM PKPQQLDTEM AQLRVHRMRY EELLNKQPQL
      361 RQIRQANGQP LTAEQNQILD AQLRTQRELL NSLLQGGDTL ILELTKLKVS NSQLEDALKE
      421 VNEATHRYLF WTADVSPLSL SWPVDLVQDL RRLISLDTFN QLGKASIMML TSKETLLPLF
      481 GALALVGFSL YSRQHFNRFL ERSASRVGKV TQDHFSLTLR TVFWSILVAS PLPVLWATLG
      541 YGLQEAWPYP LAVAIGDGVT ATVPLLWVVM ICAAFARPNG LFVAHFGWPR NRVAKAMRYY
      601 LMSIGLIVPL IMAVIMFDNL NDREFSGSLG RLCFILICGA LALVTLSLKK AGIPLYLDKE
      661 GNGDNMVNSL LWNMLMGAPL IAILAAAVGY LATAQALLAR LETSVAIWFL LLVIYHVIRR
      721 WMLIQRRRLA FDRAKHRRAE MLAQRARGEE EPAHSSSLEG AVDIDESEID LDAISAQSLR
      781 LVRSILMLIA LLSVIVLWSE IHSAFGFLEN ISLWDVTSTV QGVESLEPIT LGAVLIAILV
      841 FIITTQLVRN LPALLELALL QHLDLTPGTG YAITTITKYL LMLIGGLVGF SMIGIEWSKL
      901 QWLVAALGVG LGFGLQEIFA NFISGLIILF EKPIRIGDTV TIRDLTGSVT KINTRATTIS
      961 DWDRKEIIVP NKAFITEQFI NWSLSDSVTR VVLTIPAPAD ANSEEVTQIL LTAAQRCSLV
     1021 LDNPPPEIFL VDLQQGIQIF ELRIYAAEMG HRMPLRHEIH QLILAGFREH GIDMPFPPFQ
     1081 MRLESLGGKQ TGRTLTSAGK TSRPAGSL
//