LOCUS AAL22838.1 928 aa PRT BCT 24-JUL-2018 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 DNA polymerase I protein. ACCESSION AE006468-3875 PROTEIN_ID AAL22838.1 SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus source /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source /organism="Salmonella virus Fels2" /mol_type="genomic DNA" /db_xref="taxon:194701" protein /gene="polA" /locus_tag="STM3999" /EC_number="2.7.7.7" /note="3'->5' polymerase, 5'->3' and 3'->5' exonuclease; similar to E. coli DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease (AAC76861.1); Blastp hit to AAC76861.1 (928 aa), 93% identity in aa 1 - 928" /transl_table=11 BEGIN 1 MVQIPENPLI LVDGSSYLYR AYHAFPPLTN SAGEPTGAMY GVLNMLRSLI MQYQPTHAAV 61 VFDAKGKTFR DELFEHYKSH RPPMPDDLRA QIEPLHAMVK AMGLPLLAVS GVEADDVIGT 121 LAREAEKVGR PVLISTGDKD MAQLVTPNIT LINTMTNTIL GPDEVVNKYG VPPELIIDFL 181 ALMGDSSDNI PGVPGVGEKT AQALLQGLGG LDTLYAEPEK IAGLTFRGAK TMAGKLAQNK 241 DVAYLSYKLA TIKTDVELEL TCEQLEVQQP IADELLGLFK KYEFKRWTAD VESGKWLQAK 301 GAKPAAKPQE TVVIDESPSE PAAALSYENY VTILDDVTLE SWIEKLKKAP VFAFDTETDS 361 LDNIAANLVG LSFAIEPGVA AYVPVAHDYL DAPDQISRQR ALELLKPLLE DEKVRKVGQN 421 LKYDRGVLQN YGIELRGIAF DTMLESYILN SVAGRHDMDS LSDRWLKHKT ITFEDIAGKG 481 KNQLTFNQIA LEEAGRYAAE DADVTLQLHL KMWPELQQHK GPLNVFENIE MPLVPVLSRV 541 ERNGVKIDPA VLHKHSEEIT LRLAELEKKA HDIAGEAFNL SSTKQLQTIL FEKQGIKPLK 601 KTPGGAPSTS EEVLEELALD YPLPKVILEY RGLAKLKSTY TDKLPLMINP KTGRVHTSYH 661 QAVTATGRLS STDPNLQNIP VRNEEGRRIR QAFIAPEDYL IVSADYSQIE LRIMAHLSRD 721 KGLLTAFAEG KDIHRATAAE VFGLPLDSVT GEQRRSAKAI NFGLIYGMSA FGLSRQLNIP 781 RKEAQKYMDL YFERYPGVLE YMERTRAQAK EQGYVETLEG RRLYLPDIKS SNAARRAGAE 841 RAAINAPMQG TAADIIKRAM IAVDAWLQAE QPRVRMIMQV HDELVFEVHK DDLDAVAKRI 901 HQLMENCTRI DVPLLVEVGS GENWDQAH //