LOCUS       AAL21904.1               829 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative outer membrane usher protein protein.
ACCESSION   AE006468-2940
PROTEIN_ID  AAL21904.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /gene="stdB"
                     /locus_tag="STM3028"
                     /note="similar to E. coli putative membrane protein
                     (AAC76082.1); Blastp hit to AAC76082.1 (821 aa), 42%
                     identity in aa 20 - 817"
                     /transl_table=11
BEGIN
        1 MKITRLAILI TLTFSVLKSQ ATEFNASLLD SGNLSNVDLT AFSREGYVAP GNYILDIWLN
       61 DQPVREQYPV RVVPVAGLDA AVICVTTDMV AMLGLKDKII HGLKPVTGIP DGQCLELRSA
      121 DSQVRYSAEN QRLTFIIPQA WMRYQDPDWV PPSRWSDGVT AGLLDYSLMV NRYMPQQGET
      181 STSYSLYGTA GFNLGAWRLR SDYQYSRFDS GQGASQSDFY LPQTYLFRAL PALRSKLTLG
      241 QTYLSSAIFD SFRFAGLTLA SDERMLPPSL QGYAPKISGI ANSNAQVTVS QNGRILYQTR
      301 VSPGPFELPD LSQNISGNLD VSVRESDGSV RTWQVNTASV PFMARQGQVR YKVAAGRPLY
      361 GGTHNNSTVS PDFLLGEATW GAFNNTSLYG GLIASTGDYQ SAALGIGQNM GLLGALSADV
      421 TRSDARLPHG QKQSGYSYRI NYAKTFDKTG STLAFVGYRF SDRHFLSMPE YLQRRTTDGG
      481 DAWHEKQSYT VTYSQSVPVL NMSAALSVSR LNYWNAQSNN NYMLSLNKVF SLGDLQGLSA
      541 SVSFARNQYT GGGSQNQVYA TISIPWGDSR QVSYSVQKDN RGGLQQTVNY SDFHNPDTTW
      601 NISAGHNRYD TGSNSSFSGS VQSRLPWGQA AADATLQPGQ YRSLGLSWYG SVTATAHGAA
      661 FSQSMAGNEP RMMIDTGDVA GVPVNGNSGV TNRFGVGVVS AGSSYRRSDI SVDVAALPED
      721 VDVSSSVISQ VLTEGAVGYR KIDANQGEQV LGHIRLADGA SPPFGALVVS WKTGRTAGMV
      781 GDGGLAYLTG LSGEDRRTLN VSWDGRVQCR LTLPETVTLS RGPLLLPCR
//