LOCUS AAL20477.1 842 aa PRT BCT 24-JUL-2018 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative glycosyl hydrolase protein. ACCESSION AE006468-1513 PROTEIN_ID AAL20477.1 SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus source /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source /organism="Salmonella virus Fels2" /mol_type="genomic DNA" /db_xref="taxon:194701" protein /locus_tag="STM1559" /note="similar to E. coli trehalase 6-P hydrolase (AAC77196.1); Blastp hit to AAC77196.1 (551 aa), 36% identity in aa 41 - 129, 25% identity in aa 149 - 210, 37% identity in aa 356 - 379" /transl_table=11 BEGIN 1 MIPTATYRLQ FRNGMTFDRA AALVPYLKNL GISHLYASPI FTATKASTHG YDVTDANEIE 61 PSIGGREGFE RLVAELKAQG LGLIIDIVPN HMASSLENAW WRDVLEYGKE SRYARHFDID 121 WSRRLTLPFL GDTFDAVLEN GEIAIKPDPA TGKPAFAYYD NYYPLAPATW QGREAEILAL 181 TDKAAIADLH ERQPWKLMSW RDAARSLSYR RFFEVTGLVG MRVEDKTVFD DTHRLILELV 241 RTGAVDGLRI DHIDGLADPK AYLARLRQEV GPACYITVEK ILAKGEQLPD DWPVSGTTGY 301 EFIASLAEVL VDDEQIDNLR QAYETVKGAP VDMRAELRAA KLLMVDRNFE GEFTRLLALA 361 LSIASELQIA QEESVVRQAL RELLIAFPVY RTYGTAEGLP PTDICLLHRI VERVKTLETP 421 PQPEALTFLS RLLTGDVPAS SQEEATQFRV RFQQLTGPLM AKSVEDTLFF RQNMGLALNE 481 VGAEPVTHHF SIERFHHEMK TRQARQPDAL SGTSTHDTKR GEDARARLYT LTEAPEQWSE 541 CLARWRQMNQ THVKFLNDGT APKSADTWML YQALTGVWPP VLQPQDETGL NALKTRFEAF 601 VEKALREAKL RTDWVDSNEA YETAMLDYAR YLLAPDNQTF LQDFYRSLQP FIRAGLVNSL 661 TQTVIKLTAP GVPDIYQGSE ALNFSLVDPD NRREPDFATL AQQLDQLTPG VFSREESWLN 721 GQVNQYVTAA LLRLRQQNHE LFRFGDYIPL RAVGQRADKV IAYARVNHDD ALIVVAPRLV 781 FAECDGLLSQ SHSGFWSGTD IIIPGQLNQH RYRNVLTQER LMPGERLSLA SHQGGVLVLM 841 SD //