LOCUS AAL19270.1 351 aa PRT BCT 24-JUL-2018
DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2 DNA polymerase IV protein.
ACCESSION AE006468-306
PROTEIN_ID AAL19270.1
SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4857450)
AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium
LT2
JOURNAL Nature 413 (6858), 852-856 (2001)
PUBMED 11677609
REFERENCE 2 (bases 1 to 4857450)
CONSRTM The Salmonella typhimurium Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of
Genetics, Washington University School of Medicine, 4444 Forest
Park Boulevard, St. Louis, MO 63108, USA
REFERENCE 3 (bases 1 to 4857450)
AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
SanMiguel,P. and Csonka,L.
TITLE Direct Submission
JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular
Genetics, University of California, Irvine, CA 92697, USA
REMARK Sequence update by submitter
COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1.
Supported by NIH grant 5U 01 AI43283
Coding sequences below are predicted from manually evaluated
computer analysis, using similarity information and the programs;
GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
GeneMark; http://opal.biology.gatech.edu/GeneMark/
EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
and Pedro Romero and Peter Karp at EcoCyc;
http://ecocyc.PangeaSystems.com/ecocyc/
The analyses of ribosome binding sites and promoter binding sites
were kindly provided by Heladia Salgado, Julio Collado-Vides and
ReguonDB;
http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
This sequence was finished as follows unless otherwise noted: all
regions were double stranded, sequenced with an alternate
chemistries or covered by high quality data (i.e., phred quality >=
30); an attempt was made to resolve all sequencing problems, such
as compressions and repeats; all regions were covered by sequence
from more than one m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2"
/mol_type="genomic DNA"
/strain="LT2"
/serovar="Typhimurium"
/sub_species="enterica"
/culture_collection="ATCC:700720"
/culture_collection="SGSC:1412"
/type_material="type strain of Salmonella enterica"
/db_xref="taxon:99287"
/focus
source /organism="Salmonella phage Fels-1"
/mol_type="genomic DNA"
/db_xref="taxon:128975"
source /organism="Phage Gifsy-2"
/mol_type="genomic DNA"
/db_xref="taxon:129862"
source /organism="Phage Gifsy-1"
/mol_type="genomic DNA"
/db_xref="taxon:129861"
source /organism="Salmonella virus Fels2"
/mol_type="genomic DNA"
/db_xref="taxon:194701"
protein /gene="dinP"
/locus_tag="STM0313"
/note="devoid of proofreading; damage-inducible protein P;
similar to E. coli damage-inducible protein P; putative
tRNA synthetase (AAC73335.1); Blastp hit to AAC73335.1
(351 aa), 91% identity in aa 1 - 351"
/transl_table=11
BEGIN
1 MRKIIHVDMD CFFAAVEMRD NPALRDIPIA IGGSRERRGV ISTANYPARQ FGVRSAMPTA
61 MALKLCPHLT LLPGRFDAYK EASRHVRDIF SRYTSLIEPL SLDEAWLDVT DSPHCYGSAT
121 LIAREIRQTI FNELQLTASA GVAPVKFLAK IASDLNKPNG QYVITPADVP DFLKTLPLAK
181 IPGVGKVSAA KLENMGLRTC GDIQQCDLAM LLKRFGKFGR VLWERSQGID ERDVNSERLR
241 KSVGVERTLA EDIHEWSDCE AIIEHLYPEL ERRLAIVKPD LLIARQGVKL KFNDFQQTTQ
301 EHVWPQLNKE DLITTARKTW DERRGERGVR LVGLHVTLLD PQLERQLVLG L
//