LOCUS       AAL19242.1              1289 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative inner membrane protein protein.
ACCESSION   AE006468-278
PROTEIN_ID  AAL19242.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /locus_tag="STM0285"
                     /transl_table=11
BEGIN
        1 MQKFLSLLFS RRALAVVGVL VLALLVWFVG PLVSFDTLRP LASVGSRVVT IALLLMLLVL
       61 WLVNWSMSII GISVLCLAIG FVTPLLALGD VHPFAPLWVR LTLIGFILLM YALYGLYRLW
      121 RALRMDEQLL RRFLHPRGEE VPVAGEIKAD LRTVNHIVTQ AIRQLRQLRV DMPGWRKIFE
      181 GKRFLYELPW FMVVGSPGDG KTTALLNTGL QFPLAEQMEQ TSRILTVPGG GTLHCDWWFT
      241 NEAVLIDTAG RYARHDDGGE ASAAQRNAGE WQGFLGLLRK HRPGAPLNGV ILTLNVADLT
      301 AQSPAERLAA CAALRARLAE LRETLGIRFP VYLVVTKMDL LPGFSEYFRT LTSHLRAQIW
      361 GFTLPYSRRR KAGDPQALHA ACAQELARLT LRLDQGLDTR LQEEYDLKSR QRLYTFPREF
      421 AALGEPLLEA IEQIFLDSKF DATQLNNTLR GVFFTSAAQA QADAVADQLS IWQRFVRAIK
      481 TARGESSASL PHALPDGNRS YFLHDLLTQF IFREAHLVEP NLQWAWRYRL LRLGGHLLVL
      541 VLAFLLWQGM QTSQQTNGDY LNEISARATR LDGDVKAYTG KPAMAPVPAL LDSARELSAW
      601 PELDPDAPPL AWRYGLYSVP PVTDSVASLY NRLLDQLLLP PLVKRMEYVL ADAIARQDSK
      661 AAYDALRIYL LLNLDKDHED KYNAAEIQSW VINDLGNSDS VAGFGGRAAV LTHIEALFDG
      721 SRVVHSPYEK DEALIRQARA FLDGHTSTER IYARALAAME SEAPQEFTLV RAVGADAGTV
      781 FVRSNGAPLD RGVPGIFTRE GYRELFDKRL PEFVAAATAN DGWVMGREST PKKLTDSLRS
      841 QIPGQEQSVA REVRRLYLTE YARRWQDFLD SIHSINSAGE EGSSGLAYDL QVLRTLASPD
      901 SPLMRLGKAV VEQTTLVPPP DPQARQKQLA QRASGNAGKV VQTAKLFQDI HPEERLEKTL
      961 VDDRFAALRE VIAGRTDGGQ SGGGTMQIAS LLTMLNEYYT QLTIADSALA AGTLPARITA
     1021 ADKLQLEAAK LPAPLKNILL DLTKQGTRKI NAGTGDVLNT QMEAMMGDDC RDAIDGRYPF
     1081 ADSPQEVSAE DFNRIFASGG VLDAFWSKQL APLADTASDP WRYKPTEGNM TLQGPDLTPF
     1141 QQAKQIRSVF FNSEGGKKFS WSMQISVVDM DPAIMELVID IDGQVLRYAH GPDRPLKVTW
     1201 PGPRNGSMAE ITASPRIRQD TSTLLTGGPW ALFHLLDAGM VQETAVRGRQ LVEYDFDGRR
     1261 VVLEITAGRD FNPVSRELLQ NFSCPARAL
//